RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TMEM51Q9NW97 253 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 TTF2Q9UNY4 1162 aaKnown RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 CEMIPQ8WUJ3 1361 aa14.65□□□□□ -0.07
MSH6-210ENST00000540021 IRS4O14654 1257 aaPredicted RBP14.64□□□□□ -0.07
MSH6-210ENST00000540021 DEXIO95424 95 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 PDE6AP16499 860 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 KRT2P35908 639 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 MRPS25P82663 173 aaKnown RBP14.64□□□□□ -0.07
MSH6-210ENST00000540021 NCAPHQ15003 741 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 FCHSD1Q86WN1 690 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 REXO1L1PQ8IX06 675 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 GNL3LQ9NVN8 582 aaKnown RBP14.64□□□□□ -0.07
MSH6-210ENST00000540021 WWC3Q9ULE0 1092 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 COL15A1P39059 1388 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 PHKA1P46020 1223 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 GRIN1Q05586 938 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 IQCEQ6IPM2 695 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 PIK3AP1Q6ZUJ8 805 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 MB21D2Q8IYB1 491 aaPredicted RBP14.64□□□□□ -0.07
MSH6-210ENST00000540021 AKR1B10O60218 316 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 RFX5P48382 616 aaPredicted RBP14.64□□□□□ -0.07
MSH6-210ENST00000540021 PLCD1P51178 756 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 USP49Q70CQ1 688 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 ATG9AQ7Z3C6 839 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 CDK5RAP3Q96JB5 506 aa14.64□□□□□ -0.07
MSH6-210ENST00000540021 CCDC194A0A1B0GVG4 234 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 TBC1D8O95759 1140 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 TFRCP02786 760 aaKnown RBP14.63□□□□□ -0.07
MSH6-210ENST00000540021 IDEP14735 1019 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 RESP18Q5W5W9 173 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 CYP26C1Q6V0L0 522 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 IQUBQ8NA54 791 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 ESR2Q92731 530 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 ZSWIM5Q9P217 1185 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 MRFAP1Q9Y605 127 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 PRKAB2O43741 272 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 IGHMBP2P38935 993 aaKnown RBP14.63□□□□□ -0.07
MSH6-210ENST00000540021 BICDL1Q6ZP65 573 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 MYO1BO43795 1136 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 EPS15P42566 896 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 SPAG1Q07617 926 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 ODF2Q5BJF6 829 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 TMTC1Q8IUR5 882 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 SYMPKQ92797 1274 aaKnown RBP14.63□□□□□ -0.07
MSH6-210ENST00000540021 MYO6Q9UM54 1294 aa14.63□□□□□ -0.07
MSH6-210ENST00000540021 SH2B2O14492 632 aaPredicted RBP14.62□□□□□ -0.07
MSH6-210ENST00000540021 KRT86O43790 486 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 UQCRFS1P1P0C7P4 283 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 GUCY1A2P33402 732 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 JAG2Q9Y219 1238 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 N4BP1O75113 896 aaKnown RBP14.62□□□□□ -0.07
MSH6-210ENST00000540021 SASH3O75995 380 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 MCM3P25205 808 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 PAFAH1B1P43034 410 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 ANTXR2P58335 489 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 RNASE9P60153 205 aaKnown RBP14.62□□□□□ -0.07
MSH6-210ENST00000540021 SPATA1Q5VX52 437 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 CACNA2D4Q7Z3S7 1137 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 IFNL3Q8IZI9 196 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 BCCIPQ9P287 314 aaKnown RBP eCLIP14.62□□□□□ -0.07
MSH6-210ENST00000540021 RDXP35241 583 aaKnown RBP14.62□□□□□ -0.07
MSH6-210ENST00000540021 CASP8Q14790 479 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 ENOX1Q8TC92 643 aaKnown RBP14.62□□□□□ -0.07
MSH6-210ENST00000540021 SDR42E1Q8WUS8 393 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 GREM2Q9H772 168 aa14.62□□□□□ -0.07
MSH6-210ENST00000540021 USO1O60763 962 aaKnown RBP14.61□□□□□ -0.07
MSH6-210ENST00000540021 CYLC1P35663 651 aaPredicted RBP14.61□□□□□ -0.07
MSH6-210ENST00000540021 KIF5AQ12840 1032 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 PAK1Q13153 545 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 AKNAD1Q5T1N1 836 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 TC2NQ8N9U0 490 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 OXER1Q8TDS5 423 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 NELFBQ8WX92 580 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 EXOC4Q96A65 974 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 HPS5Q9UPZ3 1129 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 EBAG9O00559 213 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 ATP8B1O43520 1251 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 SRGAP2O75044 1071 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 ATP2C2O75185 946 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 ZNF654Q8IZM8 581 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 FAM76AQ8TAV0 307 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 CCDC42Q96M95 316 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 MMRN2Q9H8L6 949 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 TSPY2A6NKD2 308 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 IRX3P78415 501 aaPredicted RBP14.61□□□□□ -0.07
MSH6-210ENST00000540021 MAP3K9P80192 1104 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 DNAJC10Q8IXB1 793 aa14.61□□□□□ -0.07
MSH6-210ENST00000540021 MCAMP43121 646 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 HLTFQ14527 1009 aaKnown RBP eCLIP14.6□□□□□ -0.072e-7■■■□□ 16.9
MSH6-210ENST00000540021 TRIM65Q6PJ69 517 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 SND1Q7KZF4 910 aaKnown RBP eCLIP14.6□□□□□ -0.076e-6■□□□□ 9.2
MSH6-210ENST00000540021 GSPT2Q8IYD1 628 aaKnown RBP14.6□□□□□ -0.07
MSH6-210ENST00000540021 IFT81Q8WYA0 676 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 VAT1LQ9HCJ6 419 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 CLTCQ00610 1675 aaKnown RBP14.6□□□□□ -0.07
MSH6-210ENST00000540021 ITSN1Q15811 1721 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 FOXO4P98177 505 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 ARID5AQ03989 594 aa14.6□□□□□ -0.07
MSH6-210ENST00000540021 CKAP4Q07065 602 aaKnown RBP14.6□□□□□ -0.07
MSH6-210ENST00000540021 TTC38Q5R3I4 469 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms