RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	MRPL41	Q8IXM3	137 aa	Known RBP	4.73	□□□□□ -1.65
CD44-238	ENST00000534296	SHISA5	Q8N114	240 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	FAM181A	Q8N9Y4	354 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	TMEM87B	Q96K49	555 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	METTL5	Q9NRN9	209 aa	Known RBP	4.73	□□□□□ -1.65
CD44-238	ENST00000534296	VAV3	Q9UKW4	847 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	ROBO2	Q9HCK4	1378 aa		4.73	□□□□□ -1.65
CD44-238	ENST00000534296	F13A1	P00488	732 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	EIF4A3	P38919	411 aa	Known RBP	4.72	□□□□□ -1.65
CD44-238	ENST00000534296	KIR3DL1	P43629	444 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	CLCN7	P51798	805 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	SLBP	Q14493	270 aa	Known RBP eCLIP	4.72	□□□□□ -1.65
CD44-238	ENST00000534296	PRAMEF13	Q5VWM6	474 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	FAM196A	Q6ZSG2	479 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	PLD6	Q8N2A8	252 aa	Known RBP	4.72	□□□□□ -1.65
CD44-238	ENST00000534296	FAM13C	Q8NE31	585 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	ASB11	Q8WXH4	323 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	FBRS	Q9HAH7	460 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	SNX11	Q9Y5W9	270 aa		4.72	□□□□□ -1.65
CD44-238	ENST00000534296	SLITRK5	O94991	958 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	TNNI2	P48788	182 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	CDK8	P49336	464 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	OXCT1	P55809	520 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	PRKCQ	Q04759	706 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	NKG7	Q16617	165 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	ANGEL2	Q5VTE6	544 aa	Known RBP	4.71	□□□□□ -1.66
CD44-238	ENST00000534296	UBE3D	Q7Z6J8	389 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	MCAT	Q8IVS2	390 aa	Known RBP	4.71	□□□□□ -1.66
CD44-238	ENST00000534296	MFSD4A	Q8N468	514 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	XAGE3	Q8WTP9	111 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	RNF34	Q969K3	372 aa		4.71	□□□□□ -1.66
CD44-238	ENST00000534296	FAM221A	A4D161	298 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-238	ENST00000534296	SCAMP3	O14828	347 aa	Known RBP	4.7	□□□□□ -1.66
CD44-238	ENST00000534296	VAMP1	P23763	118 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	APOBR	Q0VD83	1088 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	PLCL1	Q15111	1095 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	AOC3	Q16853	763 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	TMEM201	Q5SNT2	666 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	C22orf34	Q6ZV56	151 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	REC114	Q7Z4M0	266 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	USP48	Q86UV5	1035 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	KIAA0825	Q8IV33	1275 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	CYB5D2	Q8WUJ1	264 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	BCL7C	Q8WUZ0	217 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-238	ENST00000534296	DPH2	Q9BQC3	489 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-238	ENST00000534296	LRRC3	Q9BY71	257 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	KRTAP9-2	Q9BYQ4	174 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	TJP2	Q9UDY2	1190 aa		4.7	□□□□□ -1.66
CD44-238	ENST00000534296	TLR3	O15455	904 aa	Known RBP	4.69	□□□□□ -1.66
CD44-238	ENST00000534296	HTR3B	O95264	441 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	EOMES	O95936	686 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	ZNF165	P49910	485 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	IKZF1	Q13422	519 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	PHACTR4	Q8IZ21	702 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	ZNF296	Q8WUU4	475 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-238	ENST00000534296	ACSF2	Q96CM8	615 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-238	ENST00000534296	SPON2	Q9BUD6	331 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	BACH2	Q9BYV9	841 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	COPRS	Q9NQ92	184 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	KCNQ5	Q9NR82	932 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	REV1	Q9UBZ9	1251 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	KLHL3	Q9UH77	587 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	KCNH3	Q9ULD8	1083 aa		4.69	□□□□□ -1.66
CD44-238	ENST00000534296	OAS3	Q9Y6K5	1087 aa	Known RBP	4.69	□□□□□ -1.66
CD44-238	ENST00000534296	KRTAP9-6	A0A140TA67	174 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	BIN1	O00499	593 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	GRIN3B	O60391	1043 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	CBX7	O95931	251 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	ZNF865	P0CJ78	1059 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-238	ENST00000534296	MCM4	P33991	863 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.68	□□□□□ -1.66
CD44-238	ENST00000534296	FBXL19	Q6PCT2	694 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	SLFN12	Q8IYM2	578 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	ABI1	Q8IZP0	508 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	CCDC74B	Q96LY2	380 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	HEXIM2	Q96MH2	286 aa	Known RBP	4.68	□□□□□ -1.66
CD44-238	ENST00000534296	TNKS2	Q9H2K2	1166 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	TRIT1	Q9H3H1	467 aa	Known RBP	4.68	□□□□□ -1.66
CD44-238	ENST00000534296	PAK6	Q9NQU5	681 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-238	ENST00000534296	CORIN	Q9Y5Q5	1042 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	PRR36	Q9H6K5	1346 aa		4.68	□□□□□ -1.66
CD44-238	ENST00000534296	PAX4	O43316	350 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	IMPDH2	P12268	514 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	RAG1	P15918	1043 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	GBP1	P32455	592 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	RNF4	P78317	190 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	FANCC	Q00597	558 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	MCTP1	Q6DN14	999 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	THAP5	Q7Z6K1	395 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	CDH24	Q86UP0	819 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	SPACA3	Q8IXA5	215 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	REXO1	Q8N1G1	1221 aa	Known RBP	4.67	□□□□□ -1.66
CD44-238	ENST00000534296	PIWIL2	Q8TC59	973 aa	Known RBP	4.67	□□□□□ -1.66
CD44-238	ENST00000534296	PI4K2B	Q8TCG2	481 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	NKD1	Q969G9	470 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	SYTL4	Q96C24	671 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-238	ENST00000534296	MRRF	Q96E11	262 aa	Known RBP	4.67	□□□□□ -1.66
CD44-238	ENST00000534296	CCDC120	Q96HB5	630 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	SPATA32	Q96LK8	384 aa		4.67	□□□□□ -1.66

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