RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PPARAQ07869 468 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 BCORQ6W2J9 1755 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 RCAN1P53805 252 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 USP49Q70CQ1 688 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 TRMT44Q8IYL2 757 aaKnown RBP22.27■■□□□ 1.16
PCF11-203ENST00000530304 UBAC1Q9BSL1 405 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 CSRNP2Q9H175 543 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 CEP131Q9UPN4 1083 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 DISP2A7MBM2 1401 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 ACTN4O43707 911 aaKnown RBP22.27■■□□□ 1.16
PCF11-203ENST00000530304 EIF5P55010 431 aaKnown RBP22.27■■□□□ 1.16
PCF11-203ENST00000530304 BAG1Q99933 345 aaPredicted RBP22.27■■□□□ 1.16
PCF11-203ENST00000530304 PPP2R2CQ9Y2T4 447 aa22.27■■□□□ 1.16
PCF11-203ENST00000530304 TRIML1Q8N9V2 468 aa22.27■■□□□ 1.15
PCF11-203ENST00000530304 VWA3AA6NCI4 1184 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 MINDY4BA8MYZ0 360 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 IGHMBP2P38935 993 aaKnown RBP22.26■■□□□ 1.15
PCF11-203ENST00000530304 SPECC1LQ69YQ0 1117 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 KANK3Q6NY19 840 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 SDR42E1Q8WUS8 393 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 MED15Q96RN5 788 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 EXOC5O00471 708 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 URI1O94763 535 aaPredicted RBP22.26■■□□□ 1.15
PCF11-203ENST00000530304 CCDC152Q4G0S7 254 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 ARHGAP29Q52LW3 1261 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 ADGRA1Q86SQ6 560 aa22.26■■□□□ 1.15
PCF11-203ENST00000530304 CYP7A1P22680 504 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 TC2NQ8N9U0 490 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 SAMSN1Q9NSI8 373 aaKnown RBP22.25■■□□□ 1.15
PCF11-203ENST00000530304 TNKSO95271 1327 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 ADKP55263 362 aaKnown RBP22.25■■□□□ 1.15
PCF11-203ENST00000530304 SEC23AQ15436 765 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 SPATA20Q8TB22 786 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 SHISA4Q96DD7 197 aa22.25■■□□□ 1.15
PCF11-203ENST00000530304 IQSEC3Q9UPP2 1182 aaPredicted RBP22.25■■□□□ 1.15
PCF11-203ENST00000530304 NHSL1Q5SYE7 1610 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 STX10O60499 249 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 NUTM2AQ8IVF1 878 aaPredicted RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 FAM177A1Q8N128 213 aaPredicted RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 NOL10Q9BSC4 688 aaKnown RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 RNF26Q9BY78 433 aaPredicted RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 PARP3Q9Y6F1 533 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 CHRNDQ07001 517 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 INTS5Q6P9B9 1019 aaKnown RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 UBXN4Q92575 508 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 ESR2Q92731 530 aa22.24■■□□□ 1.15
PCF11-203ENST00000530304 SRRTQ9BXP5 876 aaKnown RBP22.24■■□□□ 1.15
PCF11-203ENST00000530304 SMIM22K7EJ46 135 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 CLCN6P51797 869 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 FAM205CA6NFA0 338 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 SLFN14P0C7P3 912 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 PLCD1P51178 756 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 AKAP17AQ02040 695 aaKnown RBP22.23■■□□□ 1.15
PCF11-203ENST00000530304 VPS54Q9P1Q0 977 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 ABCF2Q9UG63 623 aa22.23■■□□□ 1.15
PCF11-203ENST00000530304 ZNF335Q9H4Z2 1342 aaPredicted RBP22.22■■□□□ 1.15
PCF11-203ENST00000530304 NR1I3Q14994 352 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 PPP2R5BQ15173 497 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 PKN1Q16512 942 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 MNS1Q8NEH6 495 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 ANAPC4Q9UJX5 808 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 ERCC5P28715 1186 aaPredicted RBP22.22■■□□□ 1.15
PCF11-203ENST00000530304 TOGARAM2Q6ZUX3 1019 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 ZNF771Q7L3S4 317 aaPredicted RBP22.22■■□□□ 1.15
PCF11-203ENST00000530304 DHX58Q96C10 678 aa22.22■■□□□ 1.15
PCF11-203ENST00000530304 RTL9Q8NET4 1388 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 MAGEB6P1A0A0J9YX57 407 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 TRIM75PA6NK02 468 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 XBP1P17861 261 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 BMS1Q14692 1282 aaKnown RBP22.21■■□□□ 1.15
PCF11-203ENST00000530304 EARS2Q5JPH6 523 aaKnown RBP22.21■■□□□ 1.15
PCF11-203ENST00000530304 EPSTI1Q96J88 318 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 CARD6Q9BX69 1037 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 AATFQ9NY61 560 aaKnown RBP eCLIP22.21■■□□□ 1.15
PCF11-203ENST00000530304 RAI14Q9P0K7 980 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 MYH6P13533 1939 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 A0A087X0B3 334 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 PARP10Q53GL7 1025 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 CCDC87Q9NVE4 849 aa22.21■■□□□ 1.15
PCF11-203ENST00000530304 hCG_1642624A0A1W2PR95 340 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 GOLGA6L9A6NEM1 432 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 TERF2Q15554 542 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 ENAHQ8N8S7 591 aaPredicted RBP22.2■■□□□ 1.14
PCF11-203ENST00000530304 PHF20Q9BVI0 1012 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 PLCH1Q4KWH8 1693 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 TADA3O75528 432 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 PRDM1O75626 825 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 CAMTA2O94983 1202 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 KRT2P35908 639 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 GNG11P61952 73 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 WDR24Q96S15 920 aa22.2■■□□□ 1.14
PCF11-203ENST00000530304 ZSCAN10Q96SZ4 725 aaPredicted RBP22.2■■□□□ 1.14
PCF11-203ENST00000530304 A0A1B0GTH6 734 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 EFCAB8A8MWE9 144 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 CASQ1P31415 396 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 AFMP43652 599 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 CRKLP46109 303 aaKnown RBP22.19■■□□□ 1.14
PCF11-203ENST00000530304 FUT2Q10981 343 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 NIP7Q9Y221 180 aaKnown RBP eCLIP22.19■■□□□ 1.14
PCF11-203ENST00000530304 FHOD1Q9Y613 1164 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 441 ms