RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 WIPI1Q5MNZ9 446 aaPredicted RBP3.4□□□□□ -1.87
CD44-212ENST00000524922 PRAMEF13Q5VWM6 474 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 TTBK2Q6IQ55 1244 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 AGMOQ6ZNB7 445 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 BHLHE22Q8NFJ8 381 aaPredicted RBP3.4□□□□□ -1.87
CD44-212ENST00000524922 DNAJB8Q8NHS0 232 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 ZNF507Q8TCN5 953 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 LIN37Q96GY3 246 aaPredicted RBP3.4□□□□□ -1.87
CD44-212ENST00000524922 SP110Q9HB58 689 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 SPG7Q9UQ90 795 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 SAMM50Q9Y512 469 aa3.4□□□□□ -1.87
CD44-212ENST00000524922 PRAMEF27A3QJZ7 478 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 PRPF40AO75400 957 aaKnown RBP3.39□□□□□ -1.87
CD44-212ENST00000524922 ESR1P03372 595 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 CTSHP09668 335 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 FGD1P98174 961 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 TNK2Q07912 1038 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 SEPT6Q14141 434 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 GAB4Q2WGN9 574 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 LETMD1Q6P1Q0 360 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 HDXQ7Z353 690 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 HID1Q8IV36 788 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 MRPL41Q8IXM3 137 aaKnown RBP3.39□□□□□ -1.87
CD44-212ENST00000524922 MFSD4AQ8N468 514 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 MFSD2AQ8NA29 543 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 PPP1R13LQ8WUF5 828 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 Q96M66 194 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 MIPEPQ99797 713 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 CARS2Q9HA77 564 aaKnown RBP3.39□□□□□ -1.87
CD44-212ENST00000524922 TJP2Q9UDY2 1190 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 TACC3Q9Y6A5 838 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 AK5Q9Y6K8 562 aa3.39□□□□□ -1.87
CD44-212ENST00000524922 GNAT3A8MTJ3 354 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 WASH4PA8MWX3 477 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 SRFP11831 508 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 TFE3P19532 575 aaPredicted RBP3.38□□□□□ -1.87
CD44-212ENST00000524922 GRK4P32298 578 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 GDNFP39905 211 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 LIG3P49916 1009 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 FBLN7Q53RD9 439 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 SFRP5Q5T4F7 317 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 MEI1Q5TIA1 1274 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 ARHGAP27Q6ZUM4 889 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 CDC37L1Q7L3B6 337 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 THAP5Q7Z6K1 395 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 ELMO3Q96BJ8 720 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 FAM84AQ96KN4 292 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 FRMD6Q96NE9 622 aa3.38□□□□□ -1.87
CD44-212ENST00000524922 DUSP15Q9H1R2 295 aaPredicted RBP3.38□□□□□ -1.87
CD44-212ENST00000524922 FAM221AA4D161 298 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 LRRC10BA6NIK2 292 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 H3BS24 57 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 TSPAN15O95858 294 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 GLI1P08151 1106 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 ATP2B2Q01814 1243 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 KCNMB1Q16558 191 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 CDKAL1Q5VV42 579 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 DNAJC14Q6Y2X3 702 aaPredicted RBP3.37□□□□□ -1.87
CD44-212ENST00000524922 PRR23BQ6ZRT6 265 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 LCNL1Q6ZST4 164 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 NPAS4Q8IUM7 802 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 ACSF2Q96CM8 615 aaPredicted RBP3.37□□□□□ -1.87
CD44-212ENST00000524922 DUSP9Q99956 384 aaKnown RBP3.37□□□□□ -1.87
CD44-212ENST00000524922 DPH2Q9BQC3 489 aaPredicted RBP3.37□□□□□ -1.87
CD44-212ENST00000524922 TRAIPQ9BWF2 469 aa3.37□□□□□ -1.87
CD44-212ENST00000524922 TTF2Q9UNY4 1162 aaKnown RBP3.37□□□□□ -1.87
CD44-212ENST00000524922 DNAJC25-GNG10A0A024R161 153 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 EIF4BP23588 611 aaKnown RBP3.36□□□□□ -1.87
CD44-212ENST00000524922 CFPP27918 469 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 AFMP43652 599 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 ERVFC1P60507 584 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 ETF1P62495 437 aaKnown RBP3.36□□□□□ -1.87
CD44-212ENST00000524922 CCDC85BQ15834 202 aaPredicted RBP3.36□□□□□ -1.87
CD44-212ENST00000524922 MLANAQ16655 118 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 RALGPS1Q5JS13 557 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 FBXO33Q7Z6M2 555 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 CDH24Q86UP0 819 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 MCATQ8IVS2 390 aaKnown RBP3.36□□□□□ -1.87
CD44-212ENST00000524922 PHC3Q8NDX5 983 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 UBE2FQ969M7 185 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 TMEM87BQ96K49 555 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 ALPK1Q96QP1 1244 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 KCNK12Q9HB15 430 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 PICK1Q9NRD5 415 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 FAM53CQ9NYF3 392 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 TPX2Q9ULW0 747 aaKnown RBP3.36□□□□□ -1.87
CD44-212ENST00000524922 TLR6Q9Y2C9 796 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 PRR36Q9H6K5 1346 aa3.36□□□□□ -1.87
CD44-212ENST00000524922 ANKRD33BA6NCL7 494 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 FAM155AB1AL88 458 aaPredicted RBP3.35□□□□□ -1.87
CD44-212ENST00000524922 DNAJA2O60884 412 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 CILPO75339 1184 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 KIR3DL1P43629 444 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 DAB2P98082 770 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 RPL6Q02878 288 aaKnown RBP3.35□□□□□ -1.87
CD44-212ENST00000524922 KRTAP19-4Q3LI73 84 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 TMEM201Q5SNT2 666 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 SLC6A19Q695T7 634 aa3.35□□□□□ -1.87
CD44-212ENST00000524922 ERICH6Q7L0X2 663 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms