RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 MAP3K11Q16584 847 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 SFRP5Q5T4F7 317 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 PRAMEF13Q5VWM6 474 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 LETMD1Q6P1Q0 360 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 TMC4Q7Z404 712 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 FBXO33Q7Z6M2 555 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 MFSD4AQ8N468 514 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 ARID1BQ8NFD5 2236 aaPredicted RBP9.4□□□□□ -0.91
NUP54-209ENST00000510569 CNTNAP4Q9C0A0 1308 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 PRR33A8MZF0 331 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 CTSHP09668 335 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 ZNF746Q6NUN9 644 aaPredicted RBP9.39□□□□□ -0.91
NUP54-209ENST00000510569 MRPL41Q8IXM3 137 aaKnown RBP9.39□□□□□ -0.91
NUP54-209ENST00000510569 KRTAP9-9Q9BYP9 154 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 KRTAP9-4Q9BYQ2 154 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 SEMA3GQ9NS98 782 aa9.39□□□□□ -0.91
NUP54-209ENST00000510569 TPX2Q9ULW0 747 aaKnown RBP9.39□□□□□ -0.91
NUP54-209ENST00000510569 BTBD11A6QL63 1104 aa9.38□□□□□ -0.91
NUP54-209ENST00000510569 RPL6Q02878 288 aaKnown RBP9.38□□□□□ -0.91
NUP54-209ENST00000510569 ZP2Q05996 745 aa9.38□□□□□ -0.91
NUP54-209ENST00000510569 TAF1CQ15572 869 aaPredicted RBP9.38□□□□□ -0.91
NUP54-209ENST00000510569 COX4I2Q96KJ9 171 aa9.38□□□□□ -0.91
NUP54-209ENST00000510569 CAPN6Q9Y6Q1 641 aa9.38□□□□□ -0.91
NUP54-209ENST00000510569 USP31Q70CQ4 1352 aa9.37□□□□□ -0.91
NUP54-209ENST00000510569 TSNAXIP1Q2TAA8 658 aa9.37□□□□□ -0.91
NUP54-209ENST00000510569 PHC3Q8NDX5 983 aa9.37□□□□□ -0.91
NUP54-209ENST00000510569 LMCD1Q9NZU5 365 aa9.37□□□□□ -0.91
NUP54-209ENST00000510569 CCDC84Q86UT8 332 aaPredicted RBP9.36□□□□□ -0.91
NUP54-209ENST00000510569 RIN3Q8TB24 985 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 FAM168AQ92567 244 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 CRELD1Q96HD1 420 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 PRDM7Q9NQW5 492 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 TJP2Q9UDY2 1190 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 ST14Q9Y5Y6 855 aa9.36□□□□□ -0.91
NUP54-209ENST00000510569 FAM155AB1AL88 458 aaPredicted RBP9.35□□□□□ -0.91
NUP54-209ENST00000510569 PGRP06401 933 aa9.35□□□□□ -0.91
NUP54-209ENST00000510569 XPCQ01831 940 aaPredicted RBP9.35□□□□□ -0.91
NUP54-209ENST00000510569 TMEM87BQ96K49 555 aa9.35□□□□□ -0.91
NUP54-209ENST00000510569 HSPA12BQ96MM6 686 aa9.35□□□□□ -0.91
NUP54-209ENST00000510569 ADAM30Q9UKF2 790 aa9.35□□□□□ -0.91
NUP54-209ENST00000510569 TLR6Q9Y2C9 796 aa9.35□□□□□ -0.91
NUP54-209ENST00000510569 C8AP07357 584 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 KIR3DL1P43629 444 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 PDE4BQ07343 736 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 SLC6A19Q695T7 634 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 THAP5Q7Z6K1 395 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 FAM161BQ96MY7 647 aa9.34□□□□□ -0.91
NUP54-209ENST00000510569 XAGE3Q8WTP9 111 aa9.33□□□□□ -0.92
NUP54-209ENST00000510569 TMEM40Q8WWA1 233 aa9.33□□□□□ -0.92
NUP54-209ENST00000510569 ATP13A1Q9HD20 1204 aa9.33□□□□□ -0.92
NUP54-209ENST00000510569 CTNND2Q9UQB3 1225 aa9.33□□□□□ -0.92
NUP54-209ENST00000510569 CYP7A1P22680 504 aa9.32□□□□□ -0.92
NUP54-209ENST00000510569 CDKAL1Q5VV42 579 aa9.32□□□□□ -0.92
NUP54-209ENST00000510569 MCATQ8IVS2 390 aaKnown RBP9.32□□□□□ -0.92
NUP54-209ENST00000510569 ACSF2Q96CM8 615 aaPredicted RBP9.32□□□□□ -0.92
NUP54-209ENST00000510569 DPH2Q9BQC3 489 aaPredicted RBP9.32□□□□□ -0.92
NUP54-209ENST00000510569 CARS2Q9HA77 564 aaKnown RBP9.32□□□□□ -0.92
NUP54-209ENST00000510569 H3BS24 57 aa9.31□□□□□ -0.92
NUP54-209ENST00000510569 ERCC3P19447 782 aa9.31□□□□□ -0.92
NUP54-209ENST00000510569 LMNB2Q03252 620 aa9.31□□□□□ -0.92
NUP54-209ENST00000510569 DNAJB8Q8NHS0 232 aa9.31□□□□□ -0.92
NUP54-209ENST00000510569 RHOVQ96L33 236 aa9.31□□□□□ -0.92
NUP54-209ENST00000510569 FAM221AA4D161 298 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 SORBS3O60504 671 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 CILPO75339 1184 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 CBX7O95931 251 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 ETV3P41162 512 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 CDH24Q86UP0 819 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 ZSWIM9Q86XI8 627 aa9.3□□□□□ -0.92
NUP54-209ENST00000510569 PIWIL2Q8TC59 973 aaKnown RBP9.3□□□□□ -0.92
NUP54-209ENST00000510569 TNK2Q07912 1038 aa9.29□□□□□ -0.92
NUP54-209ENST00000510569 CAMK2GQ13555 558 aaPredicted RBP9.29□□□□□ -0.92
NUP54-209ENST00000510569 DIEXFQ68CQ4 756 aaKnown RBP9.29□□□□□ -0.92
NUP54-209ENST00000510569 JARID2Q92833 1246 aaPredicted RBP9.29□□□□□ -0.92
NUP54-209ENST00000510569 TMEM201Q5SNT2 666 aa9.28□□□□□ -0.92
NUP54-209ENST00000510569 BNC2Q6ZN30 1099 aaPredicted RBP9.28□□□□□ -0.92
NUP54-209ENST00000510569 GATAD2BQ8WXI9 593 aa9.28□□□□□ -0.92
NUP54-209ENST00000510569 C19orf73Q9NVV2 129 aa9.28□□□□□ -0.92
NUP54-209ENST00000510569 CORINQ9Y5Q5 1042 aa9.28□□□□□ -0.92
NUP54-209ENST00000510569 JAG1P78504 1218 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 TAGLNQ01995 201 aaKnown RBP9.27□□□□□ -0.93
NUP54-209ENST00000510569 ZNF648Q5T619 568 aaPredicted RBP9.27□□□□□ -0.93
NUP54-209ENST00000510569 PPP1R13LQ8WUF5 828 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 CYB5D2Q8WUJ1 264 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 TMEM74Q96NL1 305 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 RSRP1Q9BUV0 290 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 PRR36Q9H6K5 1346 aa9.27□□□□□ -0.93
NUP54-209ENST00000510569 ZNF503-AS2A6NEH8 195 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 RBAK-RBAKDNI3L0D1 243 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 FARP2O94887 1054 aaPredicted RBP9.26□□□□□ -0.93
NUP54-209ENST00000510569 BPNT1O95861 308 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 F13A1P00488 732 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 PF4P02776 101 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 ITGAEP38570 1179 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 GDNFP39905 211 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 AFMP43652 599 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 KCNMB1Q16558 191 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 CCDC27Q2M243 656 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 UBE2FQ969M7 185 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 Q96M66 194 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms