RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RNF186Q9NXI6 227 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 PAPPA2Q9BXP8 1791 aa20.39■□□□□ 0.86
LIME1-208ENST00000493265 RNF20Q5VTR2 975 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 DCAF15Q66K64 600 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 EHD4Q9H223 541 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 MKNK2Q9HBH9 465 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 ANAPC4Q9UJX5 808 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 LAMA4Q16363 1823 aa20.39■□□□□ 0.85
LIME1-208ENST00000493265 SSC5DA1L4H1 1573 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 SLC34A2O95436 690 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 HSPA4P34932 840 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 CDK8P49336 464 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 MFSD6Q6ZSS7 791 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 C16orf86Q6ZW13 317 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 DNAJC18Q9H819 358 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 HERC5Q9UII4 1024 aaKnown RBP20.38■□□□□ 0.85
LIME1-208ENST00000493265 TACC3Q9Y6A5 838 aa20.38■□□□□ 0.85
LIME1-208ENST00000493265 PDE4BQ07343 736 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 AKNAD1Q5T1N1 836 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 MOB2Q70IA6 237 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 RASAL3Q86YV0 1011 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 RASEFQ8IZ41 740 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 ZNF341Q9BYN7 854 aa20.37■□□□□ 0.85
LIME1-208ENST00000493265 ROBO3Q96MS0 1386 aa20.36■□□□□ 0.85
LIME1-208ENST00000493265 NEDD4P46934 1319 aa20.36■□□□□ 0.85
LIME1-208ENST00000493265 ZKSCAN1P17029 563 aaPredicted RBP20.36■□□□□ 0.85
LIME1-208ENST00000493265 SHMT1P34896 483 aa20.36■□□□□ 0.85
LIME1-208ENST00000493265 GABPAQ06546 454 aa20.36■□□□□ 0.85
LIME1-208ENST00000493265 SWAP70Q9UH65 585 aa20.36■□□□□ 0.85
LIME1-208ENST00000493265 ANGEL1Q9UNK9 670 aaKnown RBP20.36■□□□□ 0.85
LIME1-208ENST00000493265 E7EWF7 191 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 MPHOSPH10O00566 681 aaKnown RBP20.35■□□□□ 0.85
LIME1-208ENST00000493265 EPB41L2O43491 1005 aaKnown RBP20.35■□□□□ 0.85
LIME1-208ENST00000493265 PPP1R12BO60237 982 aaPredicted RBP20.35■□□□□ 0.85
LIME1-208ENST00000493265 GDF11O95390 407 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 STOX1Q6ZVD7 989 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 STAG1Q8WVM7 1258 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 WRNIP1Q96S55 665 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 C22orf23Q9BZE7 217 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 RNF41Q9H4P4 317 aaPredicted RBP20.35■□□□□ 0.85
LIME1-208ENST00000493265 SNX14Q9Y5W7 946 aa20.35■□□□□ 0.85
LIME1-208ENST00000493265 TNRC18O15417 2968 aaPredicted RBP20.35■□□□□ 0.85
LIME1-208ENST00000493265 TBC1D12O60347 775 aa20.34■□□□□ 0.85
LIME1-208ENST00000493265 RANBP6O60518 1105 aaKnown RBP20.34■□□□□ 0.85
LIME1-208ENST00000493265 USP2O75604 605 aaPredicted RBP20.34■□□□□ 0.85
LIME1-208ENST00000493265 SOX10P56693 466 aa20.34■□□□□ 0.85
LIME1-208ENST00000493265 CERKLQ49MI3 558 aaPredicted RBP20.34■□□□□ 0.85
LIME1-208ENST00000493265 FAM47AQ5JRC9 791 aa20.34■□□□□ 0.85
LIME1-208ENST00000493265 METTL16Q86W50 562 aaKnown RBP20.34■□□□□ 0.85
LIME1-208ENST00000493265 ZNF444Q8N0Y2 327 aaPredicted RBP20.34■□□□□ 0.85
LIME1-208ENST00000493265 ZNF287Q9HBT7 754 aa20.34■□□□□ 0.85
LIME1-208ENST00000493265 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.34■□□□□ 0.85
LIME1-208ENST00000493265 B4E1Z4 1266 aa20.33■□□□□ 0.85
LIME1-208ENST00000493265 RASA1P20936 1047 aa20.33■□□□□ 0.85
LIME1-208ENST00000493265 INPP5BP32019 993 aa20.33■□□□□ 0.85
LIME1-208ENST00000493265 TRDNQ13061 729 aa20.33■□□□□ 0.85
LIME1-208ENST00000493265 RRP1BQ14684 758 aaKnown RBP20.33■□□□□ 0.85
LIME1-208ENST00000493265 SHROOM1Q2M3G4 852 aaPredicted RBP20.33■□□□□ 0.85
LIME1-208ENST00000493265 RALYLQ86SE5 291 aaKnown RBP20.33■□□□□ 0.85
LIME1-208ENST00000493265 MYH8P13535 1937 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 UBE2Q2LH0YL09 131 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 AKR1B1P15121 316 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 IREB2P48200 963 aaKnown RBP20.32■□□□□ 0.84
LIME1-208ENST00000493265 FKBP1BP68106 108 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 MAP3K10Q02779 954 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 ADCK5Q3MIX3 580 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 TATDN1Q6P1N9 297 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 ARMC9Q7Z3E5 817 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 NKX2-3Q8TAU0 364 aa20.32■□□□□ 0.84
LIME1-208ENST00000493265 ZKSCAN4Q969J2 545 aaPredicted RBP20.32■□□□□ 0.84
LIME1-208ENST00000493265 JAKMIP1Q96N16 626 aaKnown RBP20.32■□□□□ 0.84
LIME1-208ENST00000493265 TSPY2A6NKD2 308 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 PHF20L1A8MW92 1017 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 ORC4O43929 436 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 KDM4AO75164 1064 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 TFAP4Q01664 338 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 KRT32Q14532 448 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 ABCB5Q2M3G0 1257 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 NCOA7Q8NI08 942 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 KCNB2Q92953 911 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 KRT23Q9C075 422 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 CNNM2Q9H8M5 875 aa20.31■□□□□ 0.84
LIME1-208ENST00000493265 GH2P01242 217 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 TSPY3P0CV98 308 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 TSPY8P0CW00 308 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 CPA1P15085 419 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 JAG1P78504 1218 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 CTU1Q7Z7A3 348 aaKnown RBP20.3■□□□□ 0.84
LIME1-208ENST00000493265 ESR2Q92731 530 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.3■□□□□ 0.84
LIME1-208ENST00000493265 PDE4DIPQ5VU43 2346 aa20.3■□□□□ 0.84
LIME1-208ENST00000493265 FGRP09769 529 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 PCP11498 1178 aaKnown RBP20.29■□□□□ 0.84
LIME1-208ENST00000493265 CAP2P40123 477 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 MAP3K9P80192 1104 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 COL9A3Q14050 684 aaPredicted RBP20.29■□□□□ 0.84
LIME1-208ENST00000493265 RAB3GAP1Q15042 981 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 CHST3Q7LGC8 479 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 REM2Q8IYK8 340 aaPredicted RBP20.29■□□□□ 0.84
LIME1-208ENST00000493265 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms