RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 SMIM22K7EJ46 135 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 SLC3A2P08195 630 aaKnown RBP23.51■■□□□ 1.35
LIME1-205ENST00000480139 PTPRAP18433 802 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 CDK8P49336 464 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 GRM1Q13255 1194 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 CERKLQ49MI3 558 aaPredicted RBP23.51■■□□□ 1.35
LIME1-205ENST00000480139 REM2Q8IYK8 340 aaPredicted RBP23.51■■□□□ 1.35
LIME1-205ENST00000480139 SLC44A5Q8NCS7 719 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 ZNF287Q9HBT7 754 aa23.51■■□□□ 1.35
LIME1-205ENST00000480139 GJA5P36382 358 aa23.5■■□□□ 1.35
LIME1-205ENST00000480139 JMYQ8N9B5 988 aa23.5■■□□□ 1.35
LIME1-205ENST00000480139 OTUD5Q96G74 571 aa23.5■■□□□ 1.35
LIME1-205ENST00000480139 CCDC17Q96LX7 622 aa23.5■■□□□ 1.35
LIME1-205ENST00000480139 ZBTB21Q9ULJ3 1066 aa23.5■■□□□ 1.35
LIME1-205ENST00000480139 AOC2O75106 756 aa23.49■■□□□ 1.35
LIME1-205ENST00000480139 CNKSR2Q8WXI2 1034 aa23.49■■□□□ 1.35
LIME1-205ENST00000480139 CTNNA3Q9UI47 895 aa23.49■■□□□ 1.35
LIME1-205ENST00000480139 GTF3C3Q9Y5Q9 886 aa23.49■■□□□ 1.35
LIME1-205ENST00000480139 GREB1LQ9C091 1923 aaPredicted RBP23.49■■□□□ 1.35
LIME1-205ENST00000480139 GDF11O95390 407 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 JAG1P78504 1218 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 PDE4BQ07343 736 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 ABCB5Q2M3G0 1257 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 KCNH4Q9UQ05 1017 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 PTPRFP10586 1907 aa23.48■■□□□ 1.35
LIME1-205ENST00000480139 MANSC4A6NHS7 340 aaPredicted RBP23.47■■□□□ 1.35
LIME1-205ENST00000480139 USP17L5A8MUK1 530 aa23.47■■□□□ 1.35
LIME1-205ENST00000480139 IRF6O14896 467 aa23.47■■□□□ 1.35
LIME1-205ENST00000480139 INHBEP58166 350 aa23.47■■□□□ 1.35
LIME1-205ENST00000480139 KIF23Q02241 960 aaPredicted RBP23.47■■□□□ 1.35
LIME1-205ENST00000480139 CABP5Q9NP86 173 aa23.47■■□□□ 1.35
LIME1-205ENST00000480139 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.47■■□□□ 1.35
LIME1-205ENST00000480139 ZHX2Q9Y6X8 837 aa23.47■■□□□ 1.35
LIME1-205ENST00000480139 CXCL11O14625 94 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 GH2P01242 217 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 FGRP09769 529 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 PCP11498 1178 aaKnown RBP23.46■■□□□ 1.35
LIME1-205ENST00000480139 GTF2A2P52657 109 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 SREBF2Q12772 1141 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 TMEM179Q6ZVK1 233 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 ZIC5Q96T25 663 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 WDR18Q9BV38 432 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 MKNK2Q9HBH9 465 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 AS3MTQ9HBK9 375 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.46■■□□□ 1.35
LIME1-205ENST00000480139 AFG3L2Q9Y4W6 797 aa23.46■■□□□ 1.35
LIME1-205ENST00000480139 U3KPZ7 1027 aaPredicted RBP23.46■■□□□ 1.35
LIME1-205ENST00000480139 TESPA1A2RU30 521 aaPredicted RBP23.45■■□□□ 1.34
LIME1-205ENST00000480139 RASA1P20936 1047 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 PTH1RQ03431 593 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 MKRN3Q13064 507 aaKnown RBP23.45■■□□□ 1.34
LIME1-205ENST00000480139 SNAPC2Q13487 334 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 SHROOM1Q2M3G4 852 aaPredicted RBP23.45■■□□□ 1.34
LIME1-205ENST00000480139 KIAA1211Q6ZU35 1233 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 MAP4K1Q92918 833 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 MS4A4AQ96JQ5 239 aa23.45■■□□□ 1.34
LIME1-205ENST00000480139 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.45■■□□□ 1.34
LIME1-205ENST00000480139 ZNF213O14771 459 aa23.44■■□□□ 1.34
LIME1-205ENST00000480139 TM4SF4P48230 202 aa23.44■■□□□ 1.34
LIME1-205ENST00000480139 CTDSPL2Q05D32 466 aa23.44■■□□□ 1.34
LIME1-205ENST00000480139 IMMTQ16891 758 aaKnown RBP23.44■■□□□ 1.34
LIME1-205ENST00000480139 ZNF280CQ8ND82 737 aa23.44■■□□□ 1.34
LIME1-205ENST00000480139 LSG1Q9H089 658 aaKnown RBP23.44■■□□□ 1.34
LIME1-205ENST00000480139 PLIN4Q96Q06 1357 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 LOC285556D6RIA3 1793 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 ORC4O43929 436 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 CETPP11597 493 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 AKR1B1P15121 316 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 GUCY1A2P33402 732 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 NT5C2P49902 561 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 MAP2K1Q02750 393 aaPredicted RBP23.43■■□□□ 1.34
LIME1-205ENST00000480139 STAG1Q8WVM7 1258 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 NBPF3Q9H094 633 aa23.43■■□□□ 1.34
LIME1-205ENST00000480139 RNF41Q9H4P4 317 aaPredicted RBP23.43■■□□□ 1.34
LIME1-205ENST00000480139 MPHOSPH10O00566 681 aaKnown RBP23.42■■□□□ 1.34
LIME1-205ENST00000480139 CCDC84Q86UT8 332 aaPredicted RBP23.42■■□□□ 1.34
LIME1-205ENST00000480139 ZNF444Q8N0Y2 327 aaPredicted RBP23.42■■□□□ 1.34
LIME1-205ENST00000480139 STK11IPQ8N1F8 1099 aa23.42■■□□□ 1.34
LIME1-205ENST00000480139 A0A0G2JLL6 359 aaPredicted RBP23.41■■□□□ 1.34
LIME1-205ENST00000480139 PRDM1O75626 825 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 HAND2P61296 217 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 SEPT2Q15019 361 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 RAB3GAP1Q15042 981 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 AKNAD1Q5T1N1 836 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 PRRT2Q7Z6L0 340 aaPredicted RBP23.41■■□□□ 1.34
LIME1-205ENST00000480139 ANO2Q9NQ90 1003 aa23.41■■□□□ 1.34
LIME1-205ENST00000480139 CCL15-CCL14A0A0B4J2E2 113 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 TRIM75PA6NK02 468 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 SPP2Q13103 211 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 CCL15Q16663 113 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 MFSD6Q6ZSS7 791 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 TBC1D10CQ8IV04 446 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 BRI3BPQ8WY22 251 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.4■■□□□ 1.34
LIME1-205ENST00000480139 TACC3Q9Y6A5 838 aa23.4■■□□□ 1.34
LIME1-205ENST00000480139 BACE1P56817 501 aa23.39■■□□□ 1.33
LIME1-205ENST00000480139 SH3D19Q5HYK7 790 aa23.39■■□□□ 1.33
LIME1-205ENST00000480139 NEDD1Q8NHV4 660 aa23.39■■□□□ 1.33
LIME1-205ENST00000480139 KANSL2Q9H9L4 492 aa23.39■■□□□ 1.33
LIME1-205ENST00000480139 WBP1LQ9NX94 342 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms