RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 SMIM22K7EJ46 135 aa20.25■□□□□ 0.83
SCAF11-206ENST00000474828 HSPD1P10809 573 aaKnown RBP20.25■□□□□ 0.83
SCAF11-206ENST00000474828 MAP2K1Q02750 393 aaPredicted RBP20.25■□□□□ 0.83
SCAF11-206ENST00000474828 CWC27Q6UX04 472 aaKnown RBP20.25■□□□□ 0.83
SCAF11-206ENST00000474828 PAXIP1Q6ZW49 1069 aaPredicted RBP20.25■□□□□ 0.83
SCAF11-206ENST00000474828 IL25Q9H293 177 aa20.25■□□□□ 0.83
SCAF11-206ENST00000474828 PHIPQ8WWQ0 1821 aa20.25■□□□□ 0.83
SCAF11-206ENST00000474828 CYP2D7A0A087X1C5 515 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 CXCL11O14625 94 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 IRF6O14896 467 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 ASNSP08243 561 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 AMOTL1Q8IY63 956 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 WDR18Q9BV38 432 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 AFG3L2Q9Y4W6 797 aa20.24■□□□□ 0.83
SCAF11-206ENST00000474828 SGSM2O43147 1006 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 FGAP02671 866 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 FGRP09769 529 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 CDK8P49336 464 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 MOGSQ13724 837 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 SLC4A8Q2Y0W8 1093 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 DSCC1Q9BVC3 393 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 CFHR5Q9BXR6 569 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 PICK1Q9NRD5 415 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 ZBTB21Q9ULJ3 1066 aa20.23■□□□□ 0.83
SCAF11-206ENST00000474828 FOXN1O15353 648 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 TDO2P48775 406 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 GTF2A2P52657 109 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 SREBF2Q12772 1141 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 RUFY2Q8WXA3 655 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 DYNLL2Q96FJ2 89 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 OTUD5Q96G74 571 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 CCDC17Q96LX7 622 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 NAPBQ9H115 298 aa20.22■□□□□ 0.83
SCAF11-206ENST00000474828 ATAD5Q96QE3 1844 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 APPP05067 770 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 GUCY1A2P33402 732 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 CERKLQ49MI3 558 aaPredicted RBP20.21■□□□□ 0.83
SCAF11-206ENST00000474828 SLC44A5Q8NCS7 719 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 TRIM34Q9BYJ4 488 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 ZCCHC17Q9NP64 241 aaKnown RBP20.21■□□□□ 0.83
SCAF11-206ENST00000474828 SAGE1Q9NXZ1 904 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 ZHX2Q9Y6X8 837 aa20.21■□□□□ 0.83
SCAF11-206ENST00000474828 USP17L5A8MUK1 530 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 CA12O43570 354 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 PPARAQ07869 468 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 GRM1Q13255 1194 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 SNAPC2Q13487 334 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 SHROOM1Q2M3G4 852 aaPredicted RBP20.2■□□□□ 0.82
SCAF11-206ENST00000474828 BRI3BPQ8WY22 251 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 PTPN18Q99952 460 aa20.2■□□□□ 0.82
SCAF11-206ENST00000474828 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.2■□□□□ 0.82
SCAF11-206ENST00000474828 A0A0G2JLL6 359 aaPredicted RBP20.19■□□□□ 0.82
SCAF11-206ENST00000474828 RASA1P20936 1047 aa20.19■□□□□ 0.82
SCAF11-206ENST00000474828 ABCB5Q2M3G0 1257 aa20.19■□□□□ 0.82
SCAF11-206ENST00000474828 SH3D19Q5HYK7 790 aa20.19■□□□□ 0.82
SCAF11-206ENST00000474828 PRRT2Q7Z6L0 340 aaPredicted RBP20.19■□□□□ 0.82
SCAF11-206ENST00000474828 GREB1LQ9C091 1923 aaPredicted RBP20.19■□□□□ 0.82
SCAF11-206ENST00000474828 MINDY4BA8MYZ0 360 aa20.18■□□□□ 0.82
SCAF11-206ENST00000474828 GH2P01242 217 aa20.18■□□□□ 0.82
SCAF11-206ENST00000474828 CETPP11597 493 aa20.18■□□□□ 0.82
SCAF11-206ENST00000474828 IFNL1Q8IU54 200 aa20.18■□□□□ 0.82
SCAF11-206ENST00000474828 ZNF280CQ8ND82 737 aa20.18■□□□□ 0.82
SCAF11-206ENST00000474828 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.18■□□□□ 0.82
SCAF11-206ENST00000474828 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.18■□□□□ 0.82
SCAF11-206ENST00000474828 IGF2BP3O00425 579 aaKnown RBP eCLIP20.17■□□□□ 0.82
SCAF11-206ENST00000474828 GDF11O95390 407 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 PCP11498 1178 aaKnown RBP20.17■□□□□ 0.82
SCAF11-206ENST00000474828 CTCFP49711 727 aaPredicted RBP20.17■□□□□ 0.82
SCAF11-206ENST00000474828 MKRN3Q13064 507 aaKnown RBP20.17■□□□□ 0.82
SCAF11-206ENST00000474828 TMEM179Q6ZVK1 233 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 NBPF3Q9H094 633 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 AS3MTQ9HBK9 375 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 ZNF287Q9HBT7 754 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 TACC3Q9Y6A5 838 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 PTPRFP10586 1907 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 PLIN4Q96Q06 1357 aa20.17■□□□□ 0.82
SCAF11-206ENST00000474828 IGKV6D-41A0A0C4DH26 115 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 ORC4O43929 436 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 ALDH1A1P00352 501 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 AKR1B1P15121 316 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 NT5C2P49902 561 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 NOM1Q5C9Z4 860 aaKnown RBP20.16■□□□□ 0.82
SCAF11-206ENST00000474828 SIAH1Q8IUQ4 282 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 ESYT1Q9BSJ8 1104 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 PRDM10Q9NQV6 1147 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 RNF186Q9NXI6 227 aa20.16■□□□□ 0.82
SCAF11-206ENST00000474828 CCL15-CCL14A0A0B4J2E2 113 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 SLC3A2P08195 630 aaKnown RBP20.15■□□□□ 0.82
SCAF11-206ENST00000474828 BACE1P56817 501 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 PDE4BQ07343 736 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 SPP2Q13103 211 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 CCL15Q16663 113 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 GPAT2Q6NUI2 795 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 ANKRD23Q86SG2 305 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 CCDC84Q86UT8 332 aaPredicted RBP20.15■□□□□ 0.82
SCAF11-206ENST00000474828 MAP4K1Q92918 833 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 CABP5Q9NP86 173 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 SLC45A1Q9Y2W3 748 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 LOC285556D6RIA3 1793 aa20.15■□□□□ 0.82
SCAF11-206ENST00000474828 LAMA4Q16363 1823 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms