RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ZC3H12AQ5D1E8 599 aaKnown RBP3.76□□□□□ -1.81
VPS13A-208ENST00000423463 ANKRD24Q8TF21 1146 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 PLPPR2Q96GM1 343 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 PREX2Q70Z35 1606 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 ARHGEF12Q9NZN5 1544 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 ARID4BQ4LE39 1312 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 MLH3Q9UHC1 1453 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 RBM47A0AV96 593 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 MINDY4BA8MYZ0 360 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TRIM37O94972 964 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TSPY4P0CV99 314 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TSPY10P0CW01 314 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ADMP35318 185 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ST13P50502 369 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 CDK5R2Q13319 367 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 WIPI1Q5MNZ9 446 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 LRFN4Q6PJG9 635 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 AGMOQ6ZNB7 445 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TMEM87AQ8NBN3 555 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 JARID2Q92833 1246 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ACSS3Q9H6R3 686 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 KBTBD4Q9NVX7 518 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 CACNA2D2Q9NY47 1150 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 CYP8B1Q9UNU6 501 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 HIF3AQ9Y2N7 669 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 SUPT6HQ7KZ85 1726 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 CDC42BPBQ9Y5S2 1711 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ZMYM4Q5VZL5 1548 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 MYOM3Q5VTT5 1437 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ATP10AO60312 1499 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 RNGTTO60942 597 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 RECKO95980 971 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TGFB1P01137 390 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 NTF4P34130 210 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 BNC2Q6ZN30 1099 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 PHC3Q8NDX5 983 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ELMO3Q96BJ8 720 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 MRRFQ96E11 262 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 TBC1D32Q96NH3 1257 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 FAM83CQ9BQN1 747 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 NOC4LQ9BVI4 516 aaKnown RBP3.75□□□□□ -1.81
VPS13A-208ENST00000423463 PICK1Q9NRD5 415 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 YEATS2Q9ULM3 1422 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 FRMPD1Q5SYB0 1578 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 CDC42BPAQ5VT25 1732 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 MBD5Q9P267 1494 aa3.75□□□□□ -1.81
VPS13A-208ENST00000423463 ABCC1P33527 1531 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 ZFYVE16Q7Z3T8 1539 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 GBP2P32456 591 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-208ENST00000423463 LRRC14Q15048 493 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 CLEC10AQ8IUN9 316 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 SMYD4Q8IYR2 804 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-208ENST00000423463 ISL2Q96A47 359 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 MIR1-1HGQ9H1L0 117 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 RTEL1-TNFRSF6BF6WH68 1400 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 RICTORQ6R327 1708 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 KDM5CP41229 1560 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 RNF43Q68DV7 783 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 SAMD9LQ8IVG5 1584 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 SHKBP1Q8TBC3 707 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 EZH1Q92800 747 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-208ENST00000423463 ATXN3LQ9H3M9 355 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 GSX1Q9H4S2 264 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-208ENST00000423463 KIAA1522Q9P206 1035 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-208ENST00000423463 GGT7Q9UJ14 662 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 PCDHGB7Q9Y5F8 929 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 ITSN2Q9NZM3 1697 aa3.74□□□□□ -1.81
VPS13A-208ENST00000423463 C9orf84Q5VXU9 1444 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-208ENST00000423463 FAM170BA6NMN3 283 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 WDR64B1ANS9 1081 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 IGLV1-40P01703 118 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 PF4P02776 101 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 F13BP05160 661 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 ERVK-24P63145 666 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 ZMYM1Q5SVZ6 1142 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 ZNF765Q7L2R6 523 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 RHOVQ96L33 236 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 DBNDD2Q9BQY9 259 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 SSU72Q9NP77 194 aaKnown RBP3.73□□□□□ -1.81
VPS13A-208ENST00000423463 C1GALT1Q9NS00 363 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 PRKAG2Q9UGJ0 569 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 SYCP2Q9BX26 1530 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 RPS26P62854 115 aaKnown RBP3.73□□□□□ -1.81
VPS13A-208ENST00000423463 CAMK2GQ13555 558 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-208ENST00000423463 ZNF394Q53GI3 561 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 PAOXQ6QHF9 649 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 NPM2Q86SE8 214 aaKnown RBP3.73□□□□□ -1.81
VPS13A-208ENST00000423463 YIPF2Q9BWQ6 316 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 FBRSQ9HAH7 460 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 CAMSAP2Q08AD1 1489 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 ARHGEF40Q8TER5 1519 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 FGD6Q6ZV73 1430 aa3.73□□□□□ -1.81
VPS13A-208ENST00000423463 CCDC141Q6ZP82 1450 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 F13A1P00488 732 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 HNRNPUQ00839 825 aaKnown RBP eCLIP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 NKG7Q16617 165 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 C9orf131Q5VYM1 1079 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 HS2ST1Q7LGA3 356 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ZDHHC13Q8IUH4 622 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms