RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ATG4DQ86TL0 474 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-204ENST00000399489 ZNF526Q8TF50 670 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-204ENST00000399489 ASB16Q96NS5 453 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 TINF2Q9BSI4 451 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 BCL11AQ9H165 835 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 SPG7Q9UQ90 795 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 SUGT1Q9Y2Z0 365 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 SNX11Q9Y5W9 270 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 TLDC2A0PJX2 215 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 LEFTY1O75610 366 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 NEFMP07197 916 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 CD8BP10966 210 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 COL19A1Q14993 1142 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 LLGL2Q6P1M3 1020 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 ELMO3Q96BJ8 720 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 GNAT3A8MTJ3 354 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 CLSTN1O94985 981 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 ITIH2P19823 946 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 OXCT1P55809 520 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 ZNF252P-AS1Q0IIN9 211 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 LDLRAD1Q5T700 205 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 EGFLAMQ63HQ2 1017 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 SDE2Q6IQ49 451 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 STK35Q8TDR2 534 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 ASB11Q8WXH4 323 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 WDR26Q9H7D7 661 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 PRDM16Q9HAZ2 1276 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 PRDM10Q9NQV6 1147 aa5.73□□□□□ -1.49
HMGB1-204ENST00000399489 FANCGO15287 622 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 NLGN1Q8N2Q7 840 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 PCDHA4Q9UN74 947 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 CYP8B1Q9UNU6 501 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 TBX22Q9Y458 520 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 CSADQ9Y600 493 aa5.72□□□□□ -1.49
HMGB1-204ENST00000399489 IGF2BP3O00425 579 aaKnown RBP eCLIP5.71□□□□□ -1.49
HMGB1-204ENST00000399489 PAPLNO95428 1278 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 PKN1Q16512 942 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 CCDC144BQ3MJ40 725 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 PPM1JQ5JR12 505 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 C3orf58Q8NDZ4 430 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 ZNF507Q8TCN5 953 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 DHX38Q92620 1227 aaKnown RBP5.71□□□□□ -1.49
HMGB1-204ENST00000399489 FRMD6Q96NE9 622 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 KLHL42Q9P2K6 505 aa5.71□□□□□ -1.49
HMGB1-204ENST00000399489 DCDC2CA8MYV0 355 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 LMNB1P20700 586 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 SLC23A3Q6PIS1 610 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 METTL16Q86W50 562 aaKnown RBP5.71□□□□□ -1.5
HMGB1-204ENST00000399489 NT5DC4Q86YG4 428 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 ANKRD24Q8TF21 1146 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 FAM168AQ92567 244 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 ARMC5Q96C12 935 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 MYH16Q9H6N6 1097 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 METTL14Q9HCE5 456 aaKnown RBP5.71□□□□□ -1.5
HMGB1-204ENST00000399489 SLC52A1Q9NWF4 448 aa5.71□□□□□ -1.5
HMGB1-204ENST00000399489 FARP2O94887 1054 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-204ENST00000399489 RNASE1P07998 156 aaKnown RBP5.7□□□□□ -1.5
HMGB1-204ENST00000399489 BMP6P22004 513 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 FGD1P98174 961 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 FMR1Q06787 632 aaKnown RBP eCLIP5.7□□□□□ -1.5
HMGB1-204ENST00000399489 IKZF1Q13422 519 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 EAPPQ56P03 285 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-204ENST00000399489 C12orf40Q86WS4 652 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 SLC38A3Q99624 504 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 MBNL3Q9NUK0 354 aaKnown RBP5.7□□□□□ -1.5
HMGB1-204ENST00000399489 FAM8A1Q9UBU6 413 aa5.7□□□□□ -1.5
HMGB1-204ENST00000399489 ENC1O14682 589 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 TPD52L2O43399 206 aaKnown RBP5.69□□□□□ -1.5
HMGB1-204ENST00000399489 CLCN7P51798 805 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 PTPROQ16827 1216 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 ZBTB37Q5TC79 503 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 DIEXFQ68CQ4 756 aaKnown RBP5.69□□□□□ -1.5
HMGB1-204ENST00000399489 HDXQ7Z353 690 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 SLC43A3Q8NBI5 491 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 GRIN3AQ8TCU5 1115 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 TMEM40Q8WWA1 233 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 FOXQ1Q9C009 403 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 TNKS2Q9H2K2 1166 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 PIF1Q9H611 641 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 C12orf49Q9H741 205 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 PRDM5Q9NQX1 630 aaPredicted RBP5.69□□□□□ -1.5
HMGB1-204ENST00000399489 CACNA2D2Q9NY47 1150 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 PLAGL2Q9UPG8 496 aa5.69□□□□□ -1.5
HMGB1-204ENST00000399489 hCG_2014768A0A024R1R8 64 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 LRIG2O94898 1065 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 ATP2B1P20020 1258 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 GTF2F1P35269 517 aaKnown RBP eCLIP5.68□□□□□ -1.5
HMGB1-204ENST00000399489 CCDC181Q5TID7 509 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 WFDC3Q8IUB2 231 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 KSR1Q8IVT5 923 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 EXOC8Q8IYI6 725 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 LRRN4CLQ8ND94 238 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 TTF2Q9UNY4 1162 aaKnown RBP5.68□□□□□ -1.5
HMGB1-204ENST00000399489 FAM155AB1AL88 458 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-204ENST00000399489 FBXO24O75426 580 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 CD96P40200 585 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 IGBP1P78318 339 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 ZP2Q05996 745 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 GORABQ5T7V8 394 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 PCNX4Q63HM2 1172 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms