RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NUTM2AQ8IVF1 878 aaPredicted RBP14.52□□□□□ -0.08
SHMT1-205ENST00000395684 MRFAP1Q9Y605 127 aa14.52□□□□□ -0.08
SHMT1-205ENST00000395684 GOLGA6L9A6NEM1 432 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 DEXIO95424 95 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 STAG1Q8WVM7 1258 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 SHISA4Q96DD7 197 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 CABP5Q9NP86 173 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 RAI14Q9P0K7 980 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 DACH1Q9UI36 760 aa14.52□□□□□ -0.09
SHMT1-205ENST00000395684 ERICH4A6NGS2 130 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 TRIML1Q8N9V2 468 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 FANCBQ8NB91 859 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 NUP133Q8WUM0 1156 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 IRX2Q9BZI1 471 aaPredicted RBP14.51□□□□□ -0.09
SHMT1-205ENST00000395684 ZBTB1Q9Y2K1 713 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 MROH5Q6ZUA9 1318 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 A0A087X0B3 334 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 FAM205CA6NFA0 338 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 TEX33O43247 280 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 SASH3O75995 380 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 CYP19A1P11511 503 aaPredicted RBP14.51□□□□□ -0.09
SHMT1-205ENST00000395684 TDO2P48775 406 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 EVA1CP58658 441 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 TAF3Q5VWG9 929 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 APTXQ7Z2E3 356 aaKnown RBP14.51□□□□□ -0.09
SHMT1-205ENST00000395684 MRPL44Q9H9J2 332 aaKnown RBP14.51□□□□□ -0.09
SHMT1-205ENST00000395684 SLC4A4Q9Y6R1 1079 aa14.51□□□□□ -0.09
SHMT1-205ENST00000395684 A0A1B0GTH6 734 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 TPM1P09493 284 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 PLCD1P51178 756 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 PPP2R3AQ06190 1150 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 KARSQ15046 597 aaKnown RBP14.5□□□□□ -0.09
SHMT1-205ENST00000395684 RSRC2Q7L4I2 434 aaKnown RBP14.5□□□□□ -0.09
SHMT1-205ENST00000395684 TBC1D8O95759 1140 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 ERCC5P28715 1186 aaPredicted RBP14.5□□□□□ -0.09
SHMT1-205ENST00000395684 FAM193AP78312 1265 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 SART3Q15020 963 aaKnown RBP14.5□□□□□ -0.09
SHMT1-205ENST00000395684 ZNF654Q8IZM8 581 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 MIGA1Q8NAN2 632 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 DHX58Q96C10 678 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 EPSTI1Q96J88 318 aa14.5□□□□□ -0.09
SHMT1-205ENST00000395684 SOWAHDA6NJG2 315 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 SLC5A1P13866 664 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CD44P16070 742 aaKnown RBP14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CASP1P29466 404 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CYP2C19P33261 490 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 EARS2Q5JPH6 523 aaKnown RBP14.49□□□□□ -0.09
SHMT1-205ENST00000395684 KANK3Q6NY19 840 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CC2D1AQ6P1N0 951 aaPredicted RBP14.49□□□□□ -0.09
SHMT1-205ENST00000395684 GPR161Q8N6U8 529 aaKnown RBP14.49□□□□□ -0.09
SHMT1-205ENST00000395684 UBXN6Q9BZV1 441 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 A0A0U1RQJ8 604 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 ERICH2A1L162 156 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 SMIM22K7EJ46 135 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 BCAMP50895 628 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 TEX35Q5T0J7 233 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 ATRIPQ8WXE1 791 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 NACAP1Q9BZK3 213 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CCDC196A0A1B0GTZ2 297 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 AKR1B15C9JRZ8 316 aaPredicted RBP14.49□□□□□ -0.09
SHMT1-205ENST00000395684 AFMP43652 599 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 STX17P56962 302 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 TMTC2Q8N394 836 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 PARD6BQ9BYG5 372 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 CEP131Q9UPN4 1083 aa14.49□□□□□ -0.09
SHMT1-205ENST00000395684 PNPLA7Q6ZV29 1317 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 POLR3GO15318 223 aaPredicted RBP14.48□□□□□ -0.09
SHMT1-205ENST00000395684 RBL2Q08999 1139 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 KLHL10Q6JEL2 608 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 RAD9BQ6WBX8 426 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 TIAM2Q8IVF5 1701 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 WNT7AO00755 349 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 ATP8B1O43520 1251 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 GNAT2P19087 354 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 CREBRFQ8IUR6 639 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 ZNF34Q8IZ26 560 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 CCDC12Q8WUD4 166 aaPredicted RBP14.48□□□□□ -0.09
SHMT1-205ENST00000395684 PANX2Q96RD6 677 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 ZCCHC17Q9NP64 241 aaKnown RBP14.48□□□□□ -0.09
SHMT1-205ENST00000395684 AATFQ9NY61 560 aaKnown RBP eCLIP14.48□□□□□ -0.09
SHMT1-205ENST00000395684 VPS54Q9P1Q0 977 aa14.48□□□□□ -0.09
SHMT1-205ENST00000395684 MYH3P11055 1940 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 hCG_1642624A0A1W2PR95 340 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 CCDC66A2RUB6 948 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 PPARAQ07869 468 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 CUL4BQ13620 913 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SEC23AQ15436 765 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 PKN1Q16512 942 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SPATA1Q5VX52 437 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SH3RF1Q7Z6J0 888 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 DZIP3Q86Y13 1208 aaKnown RBP14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SMYD4Q8IYR2 804 aaPredicted RBP14.47□□□□□ -0.09
SHMT1-205ENST00000395684 CPLX3Q8WVH0 158 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 PAGE5Q96GU1 130 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 LZTFL1Q9NQ48 299 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.47□□□□□ -0.09
SHMT1-205ENST00000395684 ADGRG1Q9Y653 693 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 CCDC175P0C221 793 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 PBX1P40424 430 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 ADGRA1Q86SQ6 560 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms