RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 RASSF4Q9H2L5 321 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 GREM2Q9H772 168 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 CDC23Q9UJX2 597 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 RRP15Q9Y3B9 282 aaKnown RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 PES1O00541 588 aaKnown RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 ATP8B1O43520 1251 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 PTPREP23469 700 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 FAM193AP78312 1265 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 AKAP17AQ02040 695 aaKnown RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 RIN2Q8WYP3 895 aaPredicted RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 EPB41L4AQ9HCS5 686 aaPredicted RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 HDAC6Q9UBN7 1215 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 HOOK1Q9UJC3 728 aaKnown RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 AKAP2Q9Y2D5 859 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 ACTN4O43707 911 aaKnown RBP11.53□□□□□ -0.56
PTPRA-203ENST00000356147 MBD4O95243 580 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 MMP1P03956 469 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 PDE6AP16499 860 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.53□□□□□ -0.561e-6■■□□□ 11.8
PTPRA-203ENST00000356147 NAPBQ9H115 298 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 VPS54Q9P1Q0 977 aa11.53□□□□□ -0.56
PTPRA-203ENST00000356147 SIPA1L3O60292 1781 aaPredicted RBP11.52□□□□□ -0.56
PTPRA-203ENST00000356147 A0A1B0GTH6 734 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 FAM237AA0A1B0GTK4 181 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 MAP2K7O14733 419 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 SRGAP2O75044 1071 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 CIAO1O76071 339 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 GYPCP04921 128 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 ACTN2P35609 894 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 PLCD1P51178 756 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 APTXQ7Z2E3 356 aaKnown RBP11.52□□□□□ -0.56
PTPRA-203ENST00000356147 ANKLE2Q86XL3 938 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 GSPT2Q8IYD1 628 aaKnown RBP11.52□□□□□ -0.56
PTPRA-203ENST00000356147 MIGA1Q8NAN2 632 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 TAB2Q9NYJ8 693 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 IQSEC3Q9UPP2 1182 aaPredicted RBP11.52□□□□□ -0.56
PTPRA-203ENST00000356147 CTNND2Q9UQB3 1225 aa11.52□□□□□ -0.56
PTPRA-203ENST00000356147 ARFGEF2Q9Y6D5 1785 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 SYNRGQ9UMZ2 1314 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 BAZ2BQ9UIF8 2168 aaKnown RBP11.52□□□□□ -0.57
PTPRA-203ENST00000356147 CTAGE9A4FU28 777 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 LRRIQ3A6PVS8 624 aaPredicted RBP11.52□□□□□ -0.57
PTPRA-203ENST00000356147 SARSP49591 514 aaKnown RBP11.52□□□□□ -0.57
PTPRA-203ENST00000356147 ERVK-24P63145 666 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 CASP8Q14790 479 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 MUM1L1Q5H9M0 696 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 LEKR1Q6ZMV7 388 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 HDXQ7Z353 690 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 MAGEB6Q8N7X4 407 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 EXOC4Q96A65 974 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 CAPZA3Q96KX2 299 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 GUCA1BQ9UMX6 200 aa11.52□□□□□ -0.57
PTPRA-203ENST00000356147 ITGA6P23229 1130 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 MRPS25P82663 173 aaKnown RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 PDE4CQ08493 712 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 BRD3Q15059 726 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 RTN1Q16799 776 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 SRLQ86TD4 932 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 GOLGA5Q8TBA6 731 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 CHP1Q99653 195 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 ZNF174Q15697 407 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 SHISA4Q96DD7 197 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 NUP88Q99567 741 aaPredicted RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 L1RE1Q9UN81 338 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 N4BP3O15049 544 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 MFAP3LO75121 409 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 FMNL1O95466 1100 aaPredicted RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 IFNL3Q8IZI9 196 aa11.51□□□□□ -0.57
PTPRA-203ENST00000356147 SYMPKQ92797 1274 aaKnown RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 STRBPQ96SI9 672 aaKnown RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 ADD3Q9UEY8 706 aaKnown RBP11.51□□□□□ -0.57
PTPRA-203ENST00000356147 FKBP15Q5T1M5 1219 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 TRIM22Q8IYM9 498 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 DACH1Q9UI36 760 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CTAGE15A4D2H0 777 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 MINDY4BA8MYZ0 360 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CTAGE8P0CG41 777 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 TDO2P48775 406 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 HLFQ16534 295 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CTAGE6Q86UF2 777 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CTAGE4Q8IX94 777 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CEP112Q8N8E3 955 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 TMEM87BQ96K49 555 aa11.5□□□□□ -0.57
PTPRA-203ENST00000356147 CWC15Q9P013 229 aaKnown RBP11.5□□□□□ -0.57
PTPRA-203ENST00000356147 HSP90B2PQ58FF3 399 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 SPATA1Q5VX52 437 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 PROSER2Q86WR7 435 aaPredicted RBP11.49□□□□□ -0.57
PTPRA-203ENST00000356147 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.49□□□□□ -0.57
PTPRA-203ENST00000356147 PAGE5Q96GU1 130 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 PANX2Q96RD6 677 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 FAM204AQ9H8W3 233 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 C4AP0C0L4 1744 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 C4BP0C0L5 1744 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 TCIRG1Q13488 830 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 WTAPQ15007 396 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 RILPL1Q5EBL4 403 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 MFSD6Q6ZSS7 791 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 TTLL11Q8NHH1 800 aa11.49□□□□□ -0.57
PTPRA-203ENST00000356147 ATG3Q9NT62 314 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms