RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TEAD4Q15561 434 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 SAMD5Q5TGI4 173 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 TREML1Q86YW5 311 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 DZIP1LQ8IYY4 767 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 C19orf44Q9H6X5 657 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 MIS18AQ9NYP9 233 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 KCNMB2Q9Y691 235 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 SRCAPQ6ZRS2 3230 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PTPRCP08575 1304 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 MYH8P13535 1937 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PHIPQ8WWQ0 1821 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PALLDQ8WX93 1383 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PDGFAP04085 211 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 POLR3DP05423 398 aaPredicted RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 IGKV5-2P06315 115 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 TCF3P15923 654 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PSMA6P60900 246 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 TWISTNBQ3B726 338 aaPredicted RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 FOXR1Q6PIV2 292 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 RAB44Q7Z6P3 723 aaPredicted RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 USHBP1Q8N6Y0 703 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 ANKRD44Q8N8A2 993 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PI4K2BQ8TCG2 481 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 TRIM56Q9BRZ2 755 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 RBCK1Q9BYM8 510 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 CRISPLD1Q9H336 500 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 NDFIP2Q9NV92 336 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 CUEDC1Q9NWM3 386 aaPredicted RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 SCN9AQ15858 1988 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 FOXP2O15409 715 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 RNMTO43148 476 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 BCRP11274 1271 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 GNAI1P63096 354 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 RACK1P63244 317 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 FGD1P98174 961 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 ZKSCAN2Q63HK3 967 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 C16orf71Q8IYS4 520 aaPredicted RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 KCNB2Q92953 911 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 IPO9Q96P70 1041 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 MEIS3Q99687 375 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 ANP32EQ9BTT0 268 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 MYH16Q9H6N6 1097 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 PHAXQ9H814 394 aaKnown RBP2.95□□□□□ -1.94
VPS54-202ENST00000354504 GPAMQ9HCL2 828 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 DNMT3LQ9UJW3 386 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 SNED1Q8TER0 1413 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 ATAD5Q96QE3 1844 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 IRS2Q9Y4H2 1338 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 MYH7BA7E2Y1 1941 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 PNMA6FA0A0J9YX94 578 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 SERTM1A2A2V5 107 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 PHKG2P15735 406 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 KRT76Q01546 638 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 ST3GAL1Q11201 340 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 CLEC17AQ6ZS10 378 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 NLRP8Q86W28 1048 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 AIDAQ96BJ3 306 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 ALKBH8Q96BT7 664 aaKnown RBP2.94□□□□□ -1.94
VPS54-202ENST00000354504 HHIPQ96QV1 700 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 MDFIQ99750 246 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 UTP3Q9NQZ2 479 aaKnown RBP eCLIP2.94□□□□□ -1.94
VPS54-202ENST00000354504 STRN4Q9NRL3 753 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 STAP2Q9UGK3 403 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 EID1Q9Y6B2 187 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 HOXB7P09629 217 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 FANCCQ00597 558 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 NBPF10Q6P3W6 841 aaKnown RBP2.94□□□□□ -1.94
VPS54-202ENST00000354504 UNC5CLQ8IV45 518 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 NBPF15Q8N660 670 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 SSH3Q8TE77 659 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 IFT43Q96FT9 208 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 CNTN3Q9P232 1028 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 NPHP3Q7Z494 1330 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 SLX4Q8IY92 1834 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 LCTP09848 1927 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 AKAP4Q5JQC9 854 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 CCDC136Q96JN2 1154 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 ZSCAN10Q96SZ4 725 aaPredicted RBP2.94□□□□□ -1.94
VPS54-202ENST00000354504 CHRDQ9H2X0 955 aa2.94□□□□□ -1.94
VPS54-202ENST00000354504 COL1A1P02452 1464 aaPredicted RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 GNAT3A8MTJ3 354 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 LDHBP07195 334 aaKnown RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 HSPA2P54652 639 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 UBAP2LQ14157 1087 aaKnown RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 BMP2KLQ5H9B9 411 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 CFAP53Q96M91 514 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 RUBCNLQ9H714 662 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 COPRSQ9NQ92 184 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 USP35Q9P2H5 1018 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 NOP58Q9Y2X3 529 aaKnown RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 WDR17Q8IZU2 1322 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 ZNF609O15014 1411 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 FBXO24O75426 580 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 PTSQ03393 145 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 RABL6Q3YEC7 729 aaPredicted RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 EPHA10Q5JZY3 1008 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 COL13A1Q5TAT6 717 aaPredicted RBP2.93□□□□□ -1.94
VPS54-202ENST00000354504 NUTM2GQ5VZR2 741 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 LRRC69Q6ZNQ3 347 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 KRT28Q7Z3Y7 464 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms