RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Gm10845Q3UNY9 185 aa5.22□□□□□ -1.57
Trim39-205ENSMUST00000173369 Krtap29-1A2A5X4 342 aa5.22□□□□□ -1.57
Trim39-205ENSMUST00000173369 Gm11627A6PWP4 55 aa5.21□□□□□ -1.57
Trim39-205ENSMUST00000173369 Gm12353A2AGJ4 60 aa5.2□□□□□ -1.58
Trim39-205ENSMUST00000173369 Gpr15lA0A0B4J1N3 78 aa5.2□□□□□ -1.58
Trim39-205ENSMUST00000173369 Coa6Q8BGD8 79 aa5.2□□□□□ -1.58
Trim39-205ENSMUST00000173369 Dnah8Q91XQ0 4731 aa5.19□□□□□ -1.58
Trim39-205ENSMUST00000173369 Cypt15B1AXS0 87 aa5.19□□□□□ -1.58
Trim39-205ENSMUST00000173369 Krtap14O08640 167 aa5.19□□□□□ -1.58
Trim39-205ENSMUST00000173369 A330070K13RikQ8CA53 115 aa5.18□□□□□ -1.58
Trim39-205ENSMUST00000173369 Znf706Q9D115 76 aaKnown RBP5.18□□□□□ -1.58
Trim39-205ENSMUST00000173369 Gm10642Q3TWM1 71 aa5.17□□□□□ -1.58
Trim39-205ENSMUST00000173369 Zcchc13Q9D548 170 aa5.17□□□□□ -1.58
Trim39-205ENSMUST00000173369 9530003J23RikQ8BM26 151 aa5.17□□□□□ -1.58
Trim39-205ENSMUST00000173369 Cdk2ap2Q9CPY4 127 aa5.17□□□□□ -1.58
Trim39-205ENSMUST00000173369 Herc1E9PZP8 4859 aa5.16□□□□□ -1.58
Trim39-205ENSMUST00000173369 Coa5Q99M07 74 aa5.16□□□□□ -1.58
Trim39-205ENSMUST00000173369 Vps13bQ80TY5 3993 aa5.16□□□□□ -1.58
Trim39-205ENSMUST00000173369 Hectd4E9Q2E4 4418 aa5.15□□□□□ -1.58
Trim39-205ENSMUST00000173369 Mycbp2Q7TPH6 4711 aa5.15□□□□□ -1.58
Trim39-205ENSMUST00000173369 Igkv1-117A0A140T8M0 119 aa5.15□□□□□ -1.58
Trim39-205ENSMUST00000173369 Gm9903Q8C9Y8 129 aa5.15□□□□□ -1.58
Trim39-205ENSMUST00000173369 6030445D17RikE9Q8F9 148 aa5.15□□□□□ -1.59
Trim39-205ENSMUST00000173369 Mp68P56379 58 aa5.15□□□□□ -1.59
Trim39-205ENSMUST00000173369 Ndufs5Q99LY9 106 aa5.15□□□□□ -1.59
Trim39-205ENSMUST00000173369 Gm44790A0A0N4SV91 103 aa5.14□□□□□ -1.59
Trim39-205ENSMUST00000173369 Fat3Q8BNA6 4555 aa5.14□□□□□ -1.59
Trim39-205ENSMUST00000173369 Lrp2A2ARV4 4660 aa5.14□□□□□ -1.59
Trim39-205ENSMUST00000173369 A730071L15RikQ8C4X0 137 aa5.13□□□□□ -1.59
Trim39-205ENSMUST00000173369 Pkhd1l1Q80ZA4 4249 aa5.13□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv8-18A0A0B4J1J3 123 aa5.13□□□□□ -1.59
Trim39-205ENSMUST00000173369 Wfdc13Q5DQQ6 81 aa5.13□□□□□ -1.59
Trim39-205ENSMUST00000173369 Gm17689B3GLJ4 109 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Krtap19-5O08632 62 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Rpl37aP61514 92 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Anapc11Q9CPX9 84 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Dnhd1D3Z2X2 4750 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Fat2Q5F226 4351 aa5.12□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv2-109A0A075B5K6 120 aa5.11□□□□□ -1.59
Trim39-205ENSMUST00000173369 NbdyA0A0N4SUI7 68 aa5.11□□□□□ -1.59
Trim39-205ENSMUST00000173369 Prol1E9PYQ4 312 aa5.11□□□□□ -1.59
Trim39-205ENSMUST00000173369 Pde6gP09174 87 aa5.11□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv4-58A0A0G2JGI6 119 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv8-27A0A0G2JF28 120 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv8-30A0A140T8M3 121 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Igkv1-122A0A140T8M9 119 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Gm9805F6YK59 57 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Tcl1b5P56845 121 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Elof1P60003 83 aa5.1□□□□□ -1.59
Trim39-205ENSMUST00000173369 Wfdc10Q3V2J9 124 aa5.09□□□□□ -1.59
Trim39-205ENSMUST00000173369 Defb37Q7TMD2 62 aa5.09□□□□□ -1.59
Trim39-205ENSMUST00000173369 Cox7bP56393 80 aa5.08□□□□□ -1.6
Trim39-205ENSMUST00000173369 Dmac1Q9CQ00 111 aa5.08□□□□□ -1.6
Trim39-205ENSMUST00000173369 Rpl39lQ9CQD0 51 aa5.08□□□□□ -1.6
Trim39-205ENSMUST00000173369 Krtap4-2B1AQ85 167 aa5.08□□□□□ -1.6
Trim39-205ENSMUST00000173369 Igkv8-26A0A075B5N5 123 aa5.07□□□□□ -1.6
Trim39-205ENSMUST00000173369 SptssbQ925E8 76 aa5.07□□□□□ -1.6
Trim39-205ENSMUST00000173369 Gm5142Q8C5X9 133 aa5.06□□□□□ -1.6
Trim39-205ENSMUST00000173369 Defb12Q8K4N3 78 aa5.03□□□□□ -1.6
Trim39-205ENSMUST00000173369 Gm9736A0A1W2P7N1 277 aa5.03□□□□□ -1.6
Trim39-205ENSMUST00000173369 Igkv3-4A0A140T8Q4 119 aa5.03□□□□□ -1.6
Trim39-205ENSMUST00000173369 Krtap3-1A2A591 98 aa5.03□□□□□ -1.6
Trim39-205ENSMUST00000173369 Ndufb1P0DN34 57 aa5.03□□□□□ -1.6
Trim39-205ENSMUST00000173369 Limd2Q8BGB5 128 aa5.02□□□□□ -1.61
Trim39-205ENSMUST00000173369 Msrb1Q9JLC3 116 aa5.02□□□□□ -1.61
Trim39-205ENSMUST00000173369 Q8BGJ3 129 aa5.01□□□□□ -1.61
Trim39-205ENSMUST00000173369 Igkv8-19A0A0G2JFN8 121 aa5□□□□□ -1.61
Trim39-205ENSMUST00000173369 Gm27235Q3UW50 83 aa5□□□□□ -1.61
Trim39-205ENSMUST00000173369 Lce1mQ9CR91 182 aa5□□□□□ -1.61
Trim39-205ENSMUST00000173369 Tcl1b3P56842 122 aa4.99□□□□□ -1.61
Trim39-205ENSMUST00000173369 Prr15lQ8JZM2 100 aa4.98□□□□□ -1.61
Trim39-205ENSMUST00000173369 Igkv3-5A0A140T8M6 119 aa4.98□□□□□ -1.61
Trim39-205ENSMUST00000173369 Rnase13Q5GAM7 153 aa4.98□□□□□ -1.61
Trim39-205ENSMUST00000173369 Defb39Q70KL3 74 aa4.98□□□□□ -1.61
Trim39-205ENSMUST00000173369 Chchd10Q7TNL9 138 aa4.98□□□□□ -1.61
Trim39-205ENSMUST00000173369 Sfta2E9PXB6 77 aa4.94□□□□□ -1.62
Trim39-205ENSMUST00000173369 Gm18596A0A1W2P860 280 aa4.93□□□□□ -1.62
Trim39-205ENSMUST00000173369 Odf3bQ5M8M2 238 aa4.93□□□□□ -1.62
Trim39-205ENSMUST00000173369 Spaca4Q80ZQ0 127 aa4.93□□□□□ -1.62
Trim39-205ENSMUST00000173369 Vpreb3D3Z6J4 130 aa4.92□□□□□ -1.62
Trim39-205ENSMUST00000173369 Gm10139O88245 57 aa4.92□□□□□ -1.62
Trim39-205ENSMUST00000173369 Romo1P60603 79 aa4.92□□□□□ -1.62
Trim39-205ENSMUST00000173369 Q8K1L6 76 aa4.92□□□□□ -1.62
Trim39-205ENSMUST00000173369 Gm7276Q3TYW4 209 aa4.91□□□□□ -1.62
Trim39-205ENSMUST00000173369 2310057N15RikQ9D6T8 200 aa4.9□□□□□ -1.63
Trim39-205ENSMUST00000173369 Pla2g10Q9QXX3 151 aa4.89□□□□□ -1.63
Trim39-205ENSMUST00000173369 Igkv8-28A0A0G2JE47 121 aa4.89□□□□□ -1.63
Trim39-205ENSMUST00000173369 Gm21886J3QJU9 214 aa4.88□□□□□ -1.63
Trim39-205ENSMUST00000173369 Sprr2jO70561 109 aa4.88□□□□□ -1.63
Trim39-205ENSMUST00000173369 1700018G05RikA0A1B0GSI2 66 aa4.87□□□□□ -1.63
Trim39-205ENSMUST00000173369 Gm20661K7N787 53 aa4.86□□□□□ -1.63
Trim39-205ENSMUST00000173369 Gm37013Q8K491 104 aa4.85□□□□□ -1.63
Trim39-205ENSMUST00000173369 Ubr4A2AN08 5180 aa4.84□□□□□ -1.64
Trim39-205ENSMUST00000173369 D6Ertd527eA0A0N4SWI3 464 aa4.83□□□□□ -1.64
Trim39-205ENSMUST00000173369 Gm28230A0A0A0MQ91 144 aa4.83□□□□□ -1.64
Trim39-205ENSMUST00000173369 A0A286YE49 62 aa4.83□□□□□ -1.64
Trim39-205ENSMUST00000173369 Ush2AQ2QI47 5193 aa4.82□□□□□ -1.64
Trim39-205ENSMUST00000173369 Uqcr11Q9CPX8 56 aa4.81□□□□□ -1.64
Trim39-205ENSMUST00000173369 Gm5965D3Z724 196 aa4.8□□□□□ -1.64
Trim39-205ENSMUST00000173369 C130032M10RikQ8C888 123 aa4.8□□□□□ -1.64
Retrieved 100 of 22,080 RNA–protein pairs in 91.6 ms