RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Gm7173A0A0G2JEB6 3132 aa11.18□□□□□ -0.62
Sh3rf1-201ENSMUST00000034060 Vps13aQ5H8C4 3166 aa11.15□□□□□ -0.62
Sh3rf1-201ENSMUST00000034060 Usp34Q6ZQ93 3582 aa11.11□□□□□ -0.63
Sh3rf1-201ENSMUST00000034060 Gm19668J3QMD1 248 aa11.1□□□□□ -0.63
Sh3rf1-201ENSMUST00000034060 BptfA2A654 3036 aaKnown RBP11.09□□□□□ -0.63
Sh3rf1-201ENSMUST00000034060 Frem2Q6NVD0 3160 aa11.08□□□□□ -0.64
Sh3rf1-201ENSMUST00000034060 Gm11939A2A592 99 aa11.05□□□□□ -0.64
Sh3rf1-201ENSMUST00000034060 Zzef1Q5SSH7 2924 aa11.05□□□□□ -0.64
Sh3rf1-201ENSMUST00000034060 Adgrg4B7ZCC9 3073 aa11□□□□□ -0.65
Sh3rf1-201ENSMUST00000034060 Pdzd2E9Q1M1 2796 aa11□□□□□ -0.65
Sh3rf1-201ENSMUST00000034060 Gm9736A0A1W2P7N1 277 aa10.99□□□□□ -0.65
Sh3rf1-201ENSMUST00000034060 DspE9Q557 2883 aaKnown RBP10.94□□□□□ -0.66
Sh3rf1-201ENSMUST00000034060 FrylF8VQ05 3007 aa10.93□□□□□ -0.66
Sh3rf1-201ENSMUST00000034060 Unc80Q8BLN6 3261 aa10.93□□□□□ -0.66
Sh3rf1-201ENSMUST00000034060 Cdh23Q99PF4 3354 aa10.92□□□□□ -0.66
Sh3rf1-201ENSMUST00000034060 Igfn1Q3KNY0 2849 aa10.92□□□□□ -0.66
Sh3rf1-201ENSMUST00000034060 AtmQ62388 3066 aa10.88□□□□□ -0.67
Sh3rf1-201ENSMUST00000034060 Wdfy4E9Q2M9 3149 aa10.87□□□□□ -0.67
Sh3rf1-201ENSMUST00000034060 Krtap3-2Q9D638 99 aa10.86□□□□□ -0.67
Sh3rf1-201ENSMUST00000034060 Krtap3-3Q9D7P0 99 aa10.86□□□□□ -0.67
Sh3rf1-201ENSMUST00000034060 Tenm4Q3UHK6 2771 aa10.85□□□□□ -0.67
Sh3rf1-201ENSMUST00000034060 Tenm3Q9WTS6 2715 aa10.83□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 Zfhx3Q61329 3726 aa10.82□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 FryE9Q8I9 3020 aa10.81□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 AspmQ8CJ27 3122 aa10.81□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 FlncQ8VHX6 2726 aaKnown RBP10.8□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 NbeaQ9EPN1 2936 aa10.8□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 Krtap3-1A2A591 98 aa10.8□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 Celsr3Q91ZI0 3301 aa10.79□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 Krtap13-1Q8K198 168 aa10.78□□□□□ -0.68
Sh3rf1-201ENSMUST00000034060 Celsr2Q9R0M0 2920 aa10.74□□□□□ -0.69
Sh3rf1-201ENSMUST00000034060 Dmxl2Q8BPN8 3032 aa10.68□□□□□ -0.7
Sh3rf1-201ENSMUST00000034060 Lrrc37aB1AWG4 3215 aa10.65□□□□□ -0.71
Sh3rf1-201ENSMUST00000034060 LrbaQ9ESE1 2856 aa10.64□□□□□ -0.71
Sh3rf1-201ENSMUST00000034060 Gm9918Q8BUR5 174 aa10.64□□□□□ -0.71
Sh3rf1-201ENSMUST00000034060 Szt2A2A9C3 3431 aa10.61□□□□□ -0.71
Sh3rf1-201ENSMUST00000034060 Nf1Q04690 2841 aa10.55□□□□□ -0.72
Sh3rf1-201ENSMUST00000034060 Krtap19-5O08632 62 aa10.49□□□□□ -0.73
Sh3rf1-201ENSMUST00000034060 Lama1P19137 3084 aa10.48□□□□□ -0.73
Sh3rf1-201ENSMUST00000034060 Trank1Q8BV79 2999 aa10.47□□□□□ -0.73
Sh3rf1-201ENSMUST00000034060 Chd9Q8BYH8 2885 aa10.46□□□□□ -0.73
Sh3rf1-201ENSMUST00000034060 Tenm1Q9WTS4 2731 aa10.46□□□□□ -0.73
Sh3rf1-201ENSMUST00000034060 Tenm2Q9WTS5 2764 aa10.36□□□□□ -0.75
Sh3rf1-201ENSMUST00000034060 Brca2P97929 3329 aa10.3□□□□□ -0.76
Sh3rf1-201ENSMUST00000034060 Megf8P60882 2789 aa10.29□□□□□ -0.76
Sh3rf1-201ENSMUST00000034060 Helz2E9QAM5 2947 aaKnown RBP10.26□□□□□ -0.77
Sh3rf1-201ENSMUST00000034060 Gm10318A0A1W2P728 225 aa10.23□□□□□ -0.77
Sh3rf1-201ENSMUST00000034060 Dchs2A0A0A6YW72 3346 aa10.23□□□□□ -0.77
Sh3rf1-201ENSMUST00000034060 Krtap7-1Q9D3I6 87 aa10.14□□□□□ -0.79
Sh3rf1-201ENSMUST00000034060 Sprr2a3Q4KL71 83 aa10.13□□□□□ -0.79
Sh3rf1-201ENSMUST00000034060 Sprr2a1Q9CQK8 83 aa10.13□□□□□ -0.79
Sh3rf1-201ENSMUST00000034060 Crct1Q6PAI5 102 aa10.03□□□□□ -0.8
Sh3rf1-201ENSMUST00000034060 Vps13cQ8BX70 3748 aa10.03□□□□□ -0.8
Sh3rf1-201ENSMUST00000034060 Krtap1-5A2A590 122 aa10.03□□□□□ -0.8
Sh3rf1-201ENSMUST00000034060 SpegQ62407 3262 aa10.02□□□□□ -0.81
Sh3rf1-201ENSMUST00000034060 Col6a3E9PWQ3 3284 aa9.93□□□□□ -0.82
Sh3rf1-201ENSMUST00000034060 OtogO55225 2910 aa9.9□□□□□ -0.82
Sh3rf1-201ENSMUST00000034060 Akap9Q70FJ1 3797 aa9.87□□□□□ -0.83
Sh3rf1-201ENSMUST00000034060 VcanQ62059 3357 aa9.8□□□□□ -0.84
Sh3rf1-201ENSMUST00000034060 RelnQ60841 3461 aa9.8□□□□□ -0.84
Sh3rf1-201ENSMUST00000034060 Krtap19-9aF8WH65 55 aa9.77□□□□□ -0.85
Sh3rf1-201ENSMUST00000034060 Myo15aQ9QZZ4 3511 aa9.76□□□□□ -0.85
Sh3rf1-201ENSMUST00000034060 DmdP11531 3678 aa9.73□□□□□ -0.85
Sh3rf1-201ENSMUST00000034060 VwfQ8CIZ8 2813 aa9.73□□□□□ -0.85
Sh3rf1-201ENSMUST00000034060 Dchs1E9PVD3 3291 aa9.72□□□□□ -0.85
Sh3rf1-201ENSMUST00000034060 Krtap19-9bQ99NG9 58 aa9.64□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Muc5acE9QAQ8 3455 aa9.64□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Krtap1-4Q3V2D6 188 aa9.62□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Wdfy3Q6VNB8 3508 aa9.6□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Gm6358A0A087WPH4 74 aa9.6□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Ank2Q8C8R3 3898 aa9.6□□□□□ -0.87
Sh3rf1-201ENSMUST00000034060 Csmd1Q923L3 3564 aa9.54□□□□□ -0.88
Sh3rf1-201ENSMUST00000034060 Huwe1Q7TMY8 4377 aaKnown RBP9.51□□□□□ -0.89
Sh3rf1-201ENSMUST00000034060 Fbn1Q61554 2873 aaKnown RBP9.49□□□□□ -0.89
Sh3rf1-201ENSMUST00000034060 Krtap8-1O08633 61 aa9.42□□□□□ -0.9
Sh3rf1-201ENSMUST00000034060 Gm19402J3QJV4 266 aa9.36□□□□□ -0.91
Sh3rf1-201ENSMUST00000034060 Krtap12-1Q9Z287 130 aa9.27□□□□□ -0.92
Sh3rf1-201ENSMUST00000034060 Zfhx4Q9JJN2 3550 aa9.26□□□□□ -0.93
Sh3rf1-201ENSMUST00000034060 Dnah10D3YYQ8 4591 aa9.22□□□□□ -0.93
Sh3rf1-201ENSMUST00000034060 Dnah14A0A140LIJ4 4489 aa9.21□□□□□ -0.93
Sh3rf1-201ENSMUST00000034060 Smg1Q8BKX6 3658 aaKnown RBP9.18□□□□□ -0.94
Sh3rf1-201ENSMUST00000034060 Dnah5Q8VHE6 4621 aa9.16□□□□□ -0.94
Sh3rf1-201ENSMUST00000034060 Stard9Q80TF6 4561 aa9.08□□□□□ -0.96
Sh3rf1-201ENSMUST00000034060 Lama5Q61001 3718 aa9.07□□□□□ -0.96
Sh3rf1-201ENSMUST00000034060 Vps13dB1ART2 4390 aa9.06□□□□□ -0.96
Sh3rf1-201ENSMUST00000034060 Dnah17Q69Z23 4481 aa9.04□□□□□ -0.96
Sh3rf1-201ENSMUST00000034060 LorP18165 486 aa8.94□□□□□ -0.98
Sh3rf1-201ENSMUST00000034060 Col7a1Q63870 2944 aa8.92□□□□□ -0.98
Sh3rf1-201ENSMUST00000034060 SpenQ62504 3644 aaKnown RBP8.9□□□□□ -0.98
Sh3rf1-201ENSMUST00000034060 PlecQ9QXS1 4691 aaKnown RBP8.84□□□□□ -0.99
Sh3rf1-201ENSMUST00000034060 Gm884A2A9H6 3643 aa8.83□□□□□ -1
Sh3rf1-201ENSMUST00000034060 Gm18596A0A1W2P860 280 aa8.82□□□□□ -1
Sh3rf1-201ENSMUST00000034060 Cmya5Q70KF4 3739 aa8.81□□□□□ -1
Sh3rf1-201ENSMUST00000034060 2310046K23RikA0A0A6YVW6 87 aa8.77□□□□□ -1.01
Sh3rf1-201ENSMUST00000034060 Muc6Q80T03 2850 aa8.76□□□□□ -1.01
Sh3rf1-201ENSMUST00000034060 Sprr2kO70562 68 aa8.75□□□□□ -1.01
Sh3rf1-201ENSMUST00000034060 Svep1A2AVA0 3567 aa8.65□□□□□ -1.02
Sh3rf1-201ENSMUST00000034060 Dnah2P0C6F1 4456 aa8.64□□□□□ -1.03
Sh3rf1-201ENSMUST00000034060 Dync2h1Q45VK7 4306 aa8.6□□□□□ -1.03
Sh3rf1-201ENSMUST00000034060 Gm10100J3QK64 120 aa8.57□□□□□ -1.04
Retrieved 100 of 22,080 RNA–protein pairs in 16.2 ms