RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Gm3646F6S692 53 aa9.99□□□□□ -0.81
Trim28-201ENSMUST00000005705 Dnah17Q69Z23 4481 aa9.99□□□□□ -0.81
Trim28-201ENSMUST00000005705 Dnah9B1AR51 4484 aa9.99□□□□□ -0.81
Trim28-201ENSMUST00000005705 Gm10139O88245 57 aa9.97□□□□□ -0.81
Trim28-201ENSMUST00000005705 Defb39Q70KL3 74 aa9.94□□□□□ -0.82
Trim28-201ENSMUST00000005705 Huwe1Q7TMY8 4377 aaKnown RBP9.94□□□□□ -0.82
Trim28-201ENSMUST00000005705 Dnah1E9Q8T7 4250 aa9.93□□□□□ -0.82
Trim28-201ENSMUST00000005705 6030445D17RikE9Q8F9 148 aa9.92□□□□□ -0.82
Trim28-201ENSMUST00000005705 Krtap10-10A0A1W2P7T6 217 aa9.91□□□□□ -0.82
Trim28-201ENSMUST00000005705 Gm20661K7N787 53 aa9.9□□□□□ -0.82
Trim28-201ENSMUST00000005705 Krtap13O88375 197 aa9.88□□□□□ -0.83
Trim28-201ENSMUST00000005705 Ly6g6cQ9Z1Q4 126 aa9.87□□□□□ -0.83
Trim28-201ENSMUST00000005705 Gm2310J3QNJ2 377 aa9.86□□□□□ -0.83
Trim28-201ENSMUST00000005705 Gm10643Q3URG9 111 aa9.86□□□□□ -0.83
Trim28-201ENSMUST00000005705 Gm4707V9GXN5 68 aa9.84□□□□□ -0.83
Trim28-201ENSMUST00000005705 PrkdcP97313 4128 aa9.84□□□□□ -0.83
Trim28-201ENSMUST00000005705 Gm9821Q8K076 103 aa9.82□□□□□ -0.84
Trim28-201ENSMUST00000005705 AW011738F6S7Q2 159 aa9.8□□□□□ -0.84
Trim28-201ENSMUST00000005705 Spaca4Q80ZQ0 127 aa9.79□□□□□ -0.84
Trim28-201ENSMUST00000005705 Ndufb1P0DN34 57 aa9.78□□□□□ -0.84
Trim28-201ENSMUST00000005705 Defb13Q8R2I4 64 aa9.78□□□□□ -0.84
Trim28-201ENSMUST00000005705 Gm27235Q3UW50 83 aa9.77□□□□□ -0.85
Trim28-201ENSMUST00000005705 Dnah7cA0A087WR13 4024 aa9.75□□□□□ -0.85
Trim28-201ENSMUST00000005705 TnxbO35452 4006 aa9.72□□□□□ -0.85
Trim28-201ENSMUST00000005705 Gm2696A0A1W2P709 240 aa9.71□□□□□ -0.86
Trim28-201ENSMUST00000005705 Gm21798J3QNU5 87 aa9.7□□□□□ -0.86
Trim28-201ENSMUST00000005705 Defb1P56386 69 aa9.69□□□□□ -0.86
Trim28-201ENSMUST00000005705 2310050C09RikG5E8Z3 280 aa9.68□□□□□ -0.86
Trim28-201ENSMUST00000005705 PlecQ9QXS1 4691 aaKnown RBP9.68□□□□□ -0.86
Trim28-201ENSMUST00000005705 Gm9918Q8BUR5 174 aa9.67□□□□□ -0.86
Trim28-201ENSMUST00000005705 Stard9Q80TF6 4561 aa9.66□□□□□ -0.86
Trim28-201ENSMUST00000005705 Dync2h1Q45VK7 4306 aa9.63□□□□□ -0.87
Trim28-201ENSMUST00000005705 Gm10065F6TJM2 114 aa9.61□□□□□ -0.87
Trim28-201ENSMUST00000005705 Krtap14O08640 167 aa9.61□□□□□ -0.87
Trim28-201ENSMUST00000005705 Q8K1L6 76 aa9.6□□□□□ -0.87
Trim28-201ENSMUST00000005705 Dnah7aE9Q0T8 4024 aa9.59□□□□□ -0.87
Trim28-201ENSMUST00000005705 Gpr15lA0A0B4J1N3 78 aa9.59□□□□□ -0.87
Trim28-201ENSMUST00000005705 Gm10999F6Q4M4 69 aa9.58□□□□□ -0.88
Trim28-201ENSMUST00000005705 Krtap29-1A2A5X4 342 aa9.58□□□□□ -0.88
Trim28-201ENSMUST00000005705 Gm12216A0A1W2P827 62 aa9.52□□□□□ -0.89
Trim28-201ENSMUST00000005705 NbdyA0A0N4SUI7 68 aa9.51□□□□□ -0.89
Trim28-201ENSMUST00000005705 Cypt14J3QPF7 87 aa9.5□□□□□ -0.89
Trim28-201ENSMUST00000005705 Gm16253D3Z167 63 aa9.5□□□□□ -0.89
Trim28-201ENSMUST00000005705 Znf706Q9D115 76 aaKnown RBP9.5□□□□□ -0.89
Trim28-201ENSMUST00000005705 Defb11Q8R2I7 77 aa9.49□□□□□ -0.89
Trim28-201ENSMUST00000005705 RetnlbQ99P86 105 aa9.48□□□□□ -0.89
Trim28-201ENSMUST00000005705 Limd2Q8BGB5 128 aa9.48□□□□□ -0.89
Trim28-201ENSMUST00000005705 Cypt15B1AXS0 87 aa9.47□□□□□ -0.89
Trim28-201ENSMUST00000005705 2310034C09RikQ9D746 214 aa9.44□□□□□ -0.9
Trim28-201ENSMUST00000005705 Hectd4E9Q2E4 4418 aa9.44□□□□□ -0.9
Trim28-201ENSMUST00000005705 Lrp1bQ9JI18 4599 aa9.44□□□□□ -0.9
Trim28-201ENSMUST00000005705 Q8BGJ3 129 aa9.43□□□□□ -0.9
Trim28-201ENSMUST00000005705 Uqcr11Q9CPX8 56 aa9.41□□□□□ -0.9
Trim28-201ENSMUST00000005705 Tnp2P11378 117 aa9.35□□□□□ -0.91
Trim28-201ENSMUST00000005705 Vps13dB1ART2 4390 aa9.29□□□□□ -0.92
Trim28-201ENSMUST00000005705 Ryr3A2AGL3 4863 aa9.19□□□□□ -0.94
Trim28-201ENSMUST00000005705 Vps13bQ80TY5 3993 aa9.17□□□□□ -0.94
Trim28-201ENSMUST00000005705 Pkd1O08852 4293 aa9.16□□□□□ -0.94
Trim28-201ENSMUST00000005705 Mp68P56379 58 aa9.16□□□□□ -0.94
Trim28-201ENSMUST00000005705 CriptO70333 101 aa9.14□□□□□ -0.95
Trim28-201ENSMUST00000005705 Lrp1Q91ZX7 4545 aaKnown RBP9.14□□□□□ -0.95
Trim28-201ENSMUST00000005705 ApobE9Q414 4505 aa9.11□□□□□ -0.95
Trim28-201ENSMUST00000005705 Dnah2P0C6F1 4456 aa9.07□□□□□ -0.96
Trim28-201ENSMUST00000005705 2310079G19RikQ9D6L6 185 aa9.07□□□□□ -0.96
Trim28-201ENSMUST00000005705 Gm3880A0A1B0GSB3 72 aa9.06□□□□□ -0.96
Trim28-201ENSMUST00000005705 Gm20538F6Z9R1 75 aa9.06□□□□□ -0.96
Trim28-201ENSMUST00000005705 4930507D05RikQ8C9C9 103 aa9.03□□□□□ -0.96
Trim28-201ENSMUST00000005705 Gm4491E0CX42 125 aa9□□□□□ -0.97
Trim28-201ENSMUST00000005705 D6Ertd527eA0A0N4SWI3 464 aa8.95□□□□□ -0.98
Trim28-201ENSMUST00000005705 Pkhd1E9PZ36 4059 aa8.94□□□□□ -0.98
Trim28-201ENSMUST00000005705 Gm9736A0A1W2P7N1 277 aa8.93□□□□□ -0.98
Trim28-201ENSMUST00000005705 Pla2g10Q9QXX3 151 aa8.93□□□□□ -0.98
Trim28-201ENSMUST00000005705 Romo1P60603 79 aa8.92□□□□□ -0.98
Trim28-201ENSMUST00000005705 Fat1A0A1L1SQU7 4645 aa8.92□□□□□ -0.98
Trim28-201ENSMUST00000005705 Fat3Q8BNA6 4555 aa8.91□□□□□ -0.98
Trim28-201ENSMUST00000005705 Krtap3-2Q9D638 99 aa8.9□□□□□ -0.98
Trim28-201ENSMUST00000005705 Krtap3-3Q9D7P0 99 aa8.9□□□□□ -0.98
Trim28-201ENSMUST00000005705 Fat2Q5F226 4351 aa8.9□□□□□ -0.98
Trim28-201ENSMUST00000005705 Dync1h1Q9JHU4 4644 aaKnown RBP8.9□□□□□ -0.98
Trim28-201ENSMUST00000005705 Gm20537G3UYK7 97 aa8.8□□□□□ -1
Trim28-201ENSMUST00000005705 Mycbp2Q7TPH6 4711 aa8.8□□□□□ -1
Trim28-201ENSMUST00000005705 Pkhd1l1Q80ZA4 4249 aa8.79□□□□□ -1
Trim28-201ENSMUST00000005705 A930033H14RikG5E8X6 103 aa8.79□□□□□ -1
Trim28-201ENSMUST00000005705 Prm2P07978 107 aa8.76□□□□□ -1.01
Trim28-201ENSMUST00000005705 Krtap15-1Q9QZU5 150 aa8.73□□□□□ -1.01
Trim28-201ENSMUST00000005705 SacsQ9JLC8 4582 aa8.72□□□□□ -1.01
Trim28-201ENSMUST00000005705 Gm11939A2A592 99 aa8.7□□□□□ -1.02
Trim28-201ENSMUST00000005705 Gm5965D3Z724 196 aa8.69□□□□□ -1.02
Trim28-201ENSMUST00000005705 Abca13Q5SSE9 5034 aa8.69□□□□□ -1.02
Trim28-201ENSMUST00000005705 Cox6b2Q80ZN9 88 aa8.65□□□□□ -1.02
Trim28-201ENSMUST00000005705 Ryr1E9PZQ0 5035 aa8.62□□□□□ -1.03
Trim28-201ENSMUST00000005705 Gm10382Q3V0T5 144 aa8.59□□□□□ -1.03
Trim28-201ENSMUST00000005705 HydinQ80W93 5154 aa8.57□□□□□ -1.04
Trim28-201ENSMUST00000005705 Rps29P62274 56 aa8.53□□□□□ -1.04
Trim28-201ENSMUST00000005705 Rnase13Q5GAM7 153 aa8.51□□□□□ -1.05
Trim28-201ENSMUST00000005705 Gm17606F6ZL36 78 aa8.5□□□□□ -1.05
Trim28-201ENSMUST00000005705 Ndufaf8A2AMZ4 74 aa8.5□□□□□ -1.05
Trim28-201ENSMUST00000005705 Gm5767A0A0J9YTU8 78 aa8.48□□□□□ -1.05
Trim28-201ENSMUST00000005705 Kmt2cQ8BRH4 4903 aa8.47□□□□□ -1.05
Trim28-201ENSMUST00000005705 Krtap19-5O08632 62 aa8.45□□□□□ -1.06
Retrieved 100 of 22,080 RNA–protein pairs in 71.2 ms