RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 A330070K13RikQ8CA53 115 aa13.1□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 Ube2aQ9Z255 152 aa13.1□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 ApobE9Q414 4505 aa13.1□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 Igkv8-27A0A0G2JF28 120 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Igkv8-30A0A140T8M3 121 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Vpreb3D3Z6J4 130 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Gm10139O88245 57 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 A830005F24RikQ8BRT5 167 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Defa28D3Z1V9 94 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Gm27235Q3UW50 83 aa13.08□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Gm10570F6VB42 170 aa13.06□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Gm10642Q3TWM1 71 aa13.05□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Sfta2E9PXB6 77 aa13.05□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Vpreb1P13372 142 aa13.05□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Gm37389A0A0A6YW05 95 aa13.04□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Trav14d-3-dv8A0A075B619 120 aa13.03□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Vpreb2P13373 142 aa13.03□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Lyrm7Q9DA03 104 aa13.02□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Cdip1Q9DB75 208 aa13.02□□□□□ -0.32
Ccdc88a-202ENSMUST00000109477 Tnp2P11378 117 aa13.02□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Fam19a3Q7TPG6 132 aa13.02□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Gm10401E9Q3K6 71 aa13.01□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Trav3-1Q5R1I8 114 aa13.01□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 D130052B06RikQ3UW13 202 aa13□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Igkv1-110A0A0B4J1I0 119 aa12.99□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Rbm3O89086 153 aaKnown RBP12.99□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Igkv3-7A0A0G2JE31 119 aa12.98□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 P06320 134 aa12.98□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Wfdc13Q5DQQ6 81 aa12.98□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Krtap14O08640 167 aa12.96□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Pde6gP09174 87 aa12.96□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 Cox6a2P43023 97 aa12.96□□□□□ -0.33
Ccdc88a-202ENSMUST00000109477 A730071L15RikQ8C4X0 137 aa12.95□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Igkv3-5A0A140T8M6 119 aa12.94□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Inafm2A0A1L1STD6 152 aa12.94□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Igkv8-28A0A0G2JE47 121 aa12.93□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Ormdl1Q921I0 153 aa12.93□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 ScxQ64124 207 aa12.91□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Ccdc179J3QM76 67 aa12.91□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 BatfO35284 125 aa12.9□□□□□ -0.34
Ccdc88a-202ENSMUST00000109477 Sprr2jO70561 109 aa12.89□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Gm12353A2AGJ4 60 aa12.88□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Gm20726G3UX18 150 aa12.88□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Odf3bQ5M8M2 238 aa12.88□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Kmt2cQ8BRH4 4903 aa12.88□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Gm10308Q9CVR5 141 aa12.87□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 HrnrQ8VHD8 2496 aa12.86□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Defb39Q70KL3 74 aa12.86□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Znf706Q9D115 76 aaKnown RBP12.85□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Dnah8Q91XQ0 4731 aa12.84□□□□□ -0.35
Ccdc88a-202ENSMUST00000109477 Chchd10Q7TNL9 138 aa12.82□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 1700018G05RikA0A1B0GSI2 66 aa12.81□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Q8BT88 171 aa12.8□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Vps13bQ80TY5 3993 aa12.78□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Igkv8-21A0A140T8P7 120 aa12.78□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 4930535I16RikQ9CUI2 172 aa12.78□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Cby1Q9D1C2 127 aa12.78□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Ubl5Q9EPV8 73 aa12.77□□□□□ -0.36
Ccdc88a-202ENSMUST00000109477 Hectd4E9Q2E4 4418 aa12.75□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Lrp1bQ9JI18 4599 aa12.75□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Bean1Q9EQG5 255 aa12.74□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Pkhd1l1Q80ZA4 4249 aa12.72□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Herc2Q4U2R1 4836 aa12.72□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Gm28230A0A0A0MQ91 144 aa12.71□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Cypt14J3QPF7 87 aa12.71□□□□□ -0.37
Ccdc88a-202ENSMUST00000109477 Igkv3-4A0A140T8Q4 119 aa12.71□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 MplkipQ9D011 178 aa12.71□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Anapc11Q9CPX9 84 aa12.69□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Tmem254aP0DN89 123 aa12.67□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Tmem254bP0DN90 123 aa12.67□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Tmem254cP0DN91 123 aa12.67□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Rpl37aP61514 92 aa12.67□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Birc6O88738 4882 aa12.66□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Gm44790A0A0N4SV91 103 aa12.65□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Mrpl34Q99N91 92 aa12.65□□□□□ -0.38
Ccdc88a-202ENSMUST00000109477 Igkv3-10A0A0G2JGN0 119 aa12.64□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 Gm37013Q8K491 104 aa12.64□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 Tmem213Q08EA8 116 aa12.63□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 C130032M10RikQ8C888 123 aa12.62□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 UqcrqQ9CQ69 82 aa12.6□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 Defa25Q5G864 92 aa12.59□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 Mrpl55Q9CZ83 127 aa12.59□□□□□ -0.39
Ccdc88a-202ENSMUST00000109477 Gm17689B3GLJ4 109 aa12.58□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Fat2Q5F226 4351 aa12.58□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 RetnlbQ99P86 105 aa12.57□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Atp5eP56382 52 aa12.57□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Gm21886J3QJU9 214 aa12.55□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Kiaa1109A2AAE1 5005 aa12.53□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Abca13Q5SSE9 5034 aa12.53□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Gm20604F8WIA3 75 aa12.53□□□□□ -0.4
Ccdc88a-202ENSMUST00000109477 Krtap19-5O08632 62 aa12.52□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Hist1h4aP62806 103 aaKnown RBP12.51□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Igf1P05017 153 aa12.51□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Fat3Q8BNA6 4555 aa12.51□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Dnhd1D3Z2X2 4750 aa12.48□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Anapc13Q8R034 74 aa12.47□□□□□ -0.41
Ccdc88a-202ENSMUST00000109477 Gm16253D3Z167 63 aa12.45□□□□□ -0.42
Ccdc88a-202ENSMUST00000109477 Lrp1Q91ZX7 4545 aaKnown RBP12.44□□□□□ -0.42
Ccdc88a-202ENSMUST00000109477 Igkv8-19A0A0G2JFN8 121 aa12.39□□□□□ -0.43
Ccdc88a-202ENSMUST00000109477 Reg3aO09037 175 aa12.39□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 3798.7 ms