RNA–Protein interactions for RNA: ENSMUST00000033158.5

Ubfd1-201, Transcript of Ubiquitin domain-containing protein UBFD1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubfd1, Length 4,849 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1-201ENSMUST00000033158 Gm44790A0A0N4SV91 103 aa11.26□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Gm10160F6Y577 67 aa11.26□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Gm10197F6QEY5 67 aa11.25□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Bean1Q9EQG5 255 aa11.25□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Prune2Q52KR3 3084 aa11.24□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Spata3Q9D9T6 193 aa11.24□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Znf414Q9DCK4 299 aa11.24□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 AtrQ9JKK8 2635 aa11.22□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Krtap16-1A2A5X5 502 aa11.22□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 AI606181Q8C7B9 129 aa11.22□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Gm10770F7D043 238 aa11.21□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Prol1E9PYQ4 312 aa11.21□□□□□ -0.61
Ubfd1-201ENSMUST00000033158 Phf5aP83870 110 aaKnown RBP11.21□□□□□ -0.62
Ubfd1-201ENSMUST00000033158 Usp24B1AY13 2617 aaKnown RBP11.2□□□□□ -0.62
Ubfd1-201ENSMUST00000033158 Gm10837Q3UTT8 145 aa11.2□□□□□ -0.62
Ubfd1-201ENSMUST00000033158 Spint4Q9D263 159 aa11.2□□□□□ -0.62
Ubfd1-201ENSMUST00000033158 Gm10308Q9CVR5 141 aa11.14□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Defb50Q6TU36 73 aa11.12□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Rps28P62858 69 aaKnown RBP11.12□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Fn1P11276 2477 aaKnown RBP11.11□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Gcn1E9PVA8 2671 aaKnown RBP11.11□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Gpr15lA0A0B4J1N3 78 aa11.11□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Lypd5Q9D7Z7 256 aa11.11□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Sprr4Q8CGN8 76 aa11.1□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Krtap11-1E9Q2E9 183 aa11.1□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Eif4ebp3Q80VV3 101 aa11.1□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Q8BT88 171 aa11.1□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Gm17606F6ZL36 78 aa11.09□□□□□ -0.63
Ubfd1-201ENSMUST00000033158 Gm10999F6Q4M4 69 aa11.08□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Gm27235Q3UW50 83 aa11.08□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 A530084C06RikQ3UTW2 186 aa11.08□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 AplnQ9R0R4 77 aa11.07□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Gm17689B3GLJ4 109 aa11.07□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Usp34Q6ZQ93 3582 aa11.07□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Spaca4Q80ZQ0 127 aa11.07□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 AY074887Q8R5F9 132 aa11.07□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Fam168bQ80XQ8 194 aa11.06□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Rpl37aP61514 92 aa11.05□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 A930002H24RikQ8C8Y3 163 aa11.05□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Itpr1P11881 2749 aa11.04□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 FlnaQ8BTM8 2647 aaKnown RBP11.04□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Sprr1bQ62267 153 aa11.04□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Limd2Q8BGB5 128 aa11.03□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 7530416G11RikJ3QJX6 159 aa11.03□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Mki67E9PVX6 3177 aaKnown RBP11.02□□□□□ -0.64
Ubfd1-201ENSMUST00000033158 Gm5617Q91VN2 117 aa11.02□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 Myo15bI7HPW8 3033 aa11.02□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 Notch1Q01705 2531 aa11.01□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 Jbts17Q8CE72 3214 aa11□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 Hectd1Q69ZR2 2618 aaKnown RBP10.97□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 4930507D05RikQ8C9C9 103 aa10.96□□□□□ -0.65
Ubfd1-201ENSMUST00000033158 1810062G17RikG3X8Y2 129 aa10.94□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 Prr13Q9CQJ5 137 aa10.94□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 Nsd1O88491 2588 aaKnown RBP10.93□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 AW011738F6S7Q2 159 aa10.92□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 Gm20661K7N787 53 aa10.91□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 RetnlbQ99P86 105 aa10.91□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 C530025M09RikF6RGA8 229 aa10.91□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 HttP42859 3119 aa10.9□□□□□ -0.66
Ubfd1-201ENSMUST00000033158 Cdc42se1Q8BHL7 80 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Gm12216A0A1W2P827 62 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Gm3233E9Q2H5 230 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Gm7276Q3TYW4 209 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Col12a1Q60847 3120 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Coa5Q99M07 74 aa10.89□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Q8BGJ3 129 aa10.88□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Akap13E9Q394 2776 aa10.87□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Prrc2cQ3TLH4 2846 aaKnown RBP10.86□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 A330070K13RikQ8CA53 115 aa10.84□□□□□ -0.67
Ubfd1-201ENSMUST00000033158 Defb1P56386 69 aa10.82□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Tnrc18Q80WC3 2878 aa10.82□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Kmt2bO08550 2713 aa10.8□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Mast4Q811L6 2618 aa10.8□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Stab1Q8R4Y4 2571 aa10.8□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Defb9Q8R2I6 67 aa10.79□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Chd7A2AJK6 2986 aaKnown RBP10.78□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Lelp1Q9DAE3 120 aa10.78□□□□□ -0.68
Ubfd1-201ENSMUST00000033158 Cypt15B1AXS0 87 aa10.76□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Phxr4P15974 95 aa10.75□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 CnbpP53996 178 aaKnown RBP10.75□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 HrnrQ8VHD8 2496 aa10.74□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 NipblQ6KCD5 2798 aaKnown RBP10.74□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Gm9195A0A140LHT4 2805 aa10.74□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Gm11213A0A1B0GR83 88 aa10.73□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Gm11565A2A4M7 156 aa10.73□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Plac8Q9JI48 112 aa10.72□□□□□ -0.69
Ubfd1-201ENSMUST00000033158 Fam104aA2A6P4 185 aa10.69□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Rev3lQ61493 3122 aa10.69□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Dmbt1Q60997 2085 aa10.68□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Anapc11Q9CPX9 84 aa10.68□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Map1aQ9QYR6 2776 aa10.67□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Zcchc13Q9D548 170 aa10.67□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Chd6A3KFM7 2711 aa10.67□□□□□ -0.7
Ubfd1-201ENSMUST00000033158 Uqcr11Q9CPX8 56 aa10.64□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 AtmQ62388 3066 aa10.62□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 Chtf8P0CG14 533 aa10.61□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 Gm7138L7N2C3 230 aa10.6□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 Gm3238W4VSP7 230 aa10.6□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 KalrnA2CG49 2964 aa10.6□□□□□ -0.71
Ubfd1-201ENSMUST00000033158 OxtP35454 125 aa10.59□□□□□ -0.71
Retrieved 100 of 22,080 RNA–protein pairs in 87.7 ms