RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gm21748Q3UE70 102 aa11.32□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Lrrc37aB1AWG4 3215 aa11.32□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Smr3aQ61900 147 aa11.32□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 EnhoQ8K1D8 76 aa11.31□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Spry2Q9QXV8 315 aa11.31□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 9430015G10RikA2ASP7 199 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm3443F7CCV5 94 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Defb12Q8K4N3 78 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Spink4O35679 86 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 P01823 113 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Defb42Q8BVB5 75 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Frem2Q6NVD0 3160 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 B230217C12RikE9Q3Z1 139 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Crip3Q6Q6R3 243 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Ighv1-62-1A0A075B5U3 116 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Myo15bI7HPW8 3033 aa11.3□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 MgaA2AWL7 3003 aaKnown RBP11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm10322F7D7I4 111 aa11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 FshbQ60687 130 aa11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Zfp462B1AWL2 2495 aaKnown RBP11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Ighv10-1A0A0B4J1J6 119 aa11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Ighv1-5A0A0A6YWG2 117 aa11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm10577Q3UDV9 132 aa11.29□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm9922Q8C3P1 144 aa11.28□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm10509O88255 85 aa11.28□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 5730596B20RikQ8BQ08 205 aa11.28□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm20604F8WIA3 75 aa11.28□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Gm17521F6QAC8 156 aa11.27□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Myo18bE9PV66 2605 aa11.27□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 E130114P18RikF6S0S7 154 aa11.27□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Gm5464Q3UY29 175 aa11.26□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Chchd7Q8K2Q5 85 aa11.26□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Prrc2cQ3TLH4 2846 aaKnown RBP11.26□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Dmxl1Q6PNC0 3013 aa11.26□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Notch2O35516 2470 aa11.25□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 9530003J23RikQ8BM26 151 aa11.25□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 A830031A19RikQ8BNT5 113 aa11.25□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Spink13Q3UTS8 97 aa11.25□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 FrylF8VQ05 3007 aa11.24□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 CrygfQ9CXV3 174 aa11.24□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Fgf23Q9EPC2 251 aa11.24□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Ighv1-59A0A0A6YXE0 117 aa11.24□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Rnf152Q8BG47 203 aa11.23□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Gm19935A0A1B0GSF9 52 aa11.23□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Sec61gP60060 68 aa11.23□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Fam19a1Q7TPG8 133 aa11.23□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 AspmQ8CJ27 3122 aa11.22□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Ighv8-11A0A075B5X4 119 aa11.22□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Fbn2Q61555 2907 aa11.22□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Brca2P97929 3329 aa11.22□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Ccdc179J3QM76 67 aa11.21□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 2010109I03RikQ9CQ11 111 aa11.21□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Prr15lQ8JZM2 100 aa11.21□□□□□ -0.61
Ccdc88b-201ENSMUST00000113440 Epg5Q80TA9 2572 aa11.21□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 A830005F24RikQ8BRT5 167 aa11.21□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Cd164l2Q9D6W7 172 aa11.21□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Gm9805F6YK59 57 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Map1aQ9QYR6 2776 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Krtap27-1E9PX37 202 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Atox1O08997 68 aaKnown RBP11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 P06320 134 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Psmb11Q8BG41 302 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Wfdc15aQ8BH89 80 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Lama1P19137 3084 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Q8K1L6 76 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Unc79Q0KK59 2596 aa11.2□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Cdip1Q9DB75 208 aa11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 4930535I16RikQ9CUI2 172 aa11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 KalrnA2CG49 2964 aa11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Hcfc1Q61191 2045 aaKnown RBP11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 1700011M02RikB1AX35 88 aa11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Plac8l1Q08EJ0 177 aa11.19□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Gm10647E9Q8X0 124 aa11.18□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Gm10337F7DEP7 55 aa11.18□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Znf580Q9DB38 172 aa11.18□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Igkv3-4A0A140T8Q4 119 aa11.17□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Pla2g1bQ9Z0Y2 146 aa11.17□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Itpr1P11881 2749 aa11.17□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Cox7bP56393 80 aa11.17□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Celsr3Q91ZI0 3301 aa11.16□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Srsf12Q8C8K3 266 aa11.16□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Tcl1b5P56845 121 aa11.16□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Gm10135F6TEE5 83 aa11.16□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Gm10300Q8C8P7 189 aa11.16□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Cdc42se2Q8BGH7 84 aa11.15□□□□□ -0.62
Ccdc88b-201ENSMUST00000113440 Igkv3-3A0A140T8Q0 119 aa11.15□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 P01755 137 aa11.15□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Ndufb1P0DN34 57 aa11.15□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Defb13Q8R2I4 64 aa11.15□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 2310009B15RikA0A0A6YWI4 143 aa11.14□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 BaalcQ8VHV1 145 aa11.14□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 BC025920Q3US60 128 aa11.13□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 4930524J08RikQ9CUJ5 163 aa11.13□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Igkv4-92A0A0B4J1I2 117 aa11.13□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Rpl28P41105 137 aaKnown RBP11.13□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Igkv8-21A0A140T8P7 120 aa11.12□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 CrygeQ03740 174 aa11.12□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Wfdc10Q3V2J9 124 aa11.11□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Ash1lQ99MY8 2958 aa11.11□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Nbeal1E9PYP2 2688 aa11.11□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 68.2 ms