RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Klk5Q9D140 293 aa11.52□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 1520401A03RikA0A0J9YVH6 598 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm10251J3QPM5 127 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Camk2n2Q78WH7 79 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm2916Q9D9B9 127 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Fhl2O70433 279 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm10542F6XDR3 90 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Defb2P82020 71 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv1-35A0A0G2JDE5 120 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Mrpl52Q9D0Y8 121 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Psmb8P28063 276 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 B9d2Q3UK10 175 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Arhgap32Q811P8 2089 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ndufc1Q9CQY9 76 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv1-85A0A075B5Y6 117 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm17472A0A075B683 117 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv3-3A0A0A6YWL2 116 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 BikO70337 150 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv8-18A0A0B4J1J3 123 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13d-4A0A0G2JFX3 110 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv1-61P01749 117 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Abca12E9Q876 2595 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Cyyr1Q8VIH7 165 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Q9D8Q6 235 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ly6c2P0CW03 131 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 TrrapQ80YV3 2565 aaKnown RBP11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Timm17bQ9Z0V7 172 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Sh2d1aO88890 126 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Vpreb2P13373 142 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 CnfnQ6PCW6 111 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 TroQ6DIC6 2087 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm8439G3UWA7 96 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13n-2A0A0G2JF93 110 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 AtmQ62388 3066 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Higd2aQ9CQJ1 106 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv2-109A0A075B5K6 120 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13-4-dv7A0A075B6C2 110 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Tcl1b3P56842 122 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Bod1lE9Q6J5 3032 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 PrlhG3UWC3 86 aa11.46□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ranbp2Q9ERU9 3053 aaKnown RBP11.46□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm37389A0A0A6YW05 95 aa11.46□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Trav13-2A0A075B649 110 aa11.46□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 SbsponQ3UPR9 264 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ighv1-66A0A075B5X5 117 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ighv2-6-8A0A0A6YWY9 116 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Prr9Q8BV84 116 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Trav13-1A0A075B644 110 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm10735Q3US96 136 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ly6gP35461 111 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Pou2af1Q64693 256 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm17577J3QNF7 156 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Polr2kQ63871 58 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Klk12B2RVZ0 247 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Naa38Q9D2U5 125 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 MtorQ9JLN9 2549 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 B230359F08RikA0A0B4J1K3 109 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Igkv1-88A0A140T8N1 120 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 CrygdP04342 174 aa11.41□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Igkv3-5A0A140T8M6 119 aa11.41□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm10490F6VBM2 120 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Fgfbp3Q1HCM0 245 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ly6hQ9WUC3 139 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Rpl39lQ9CQD0 51 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Hivep3A2A884 2348 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Vpreb3D3Z6J4 130 aa11.4□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 P01729 129 aa11.4□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Vpreb1P13372 142 aa11.39□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 1700012A03RikQ9DAF1 130 aa11.39□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Trav9n-4A0A075B631 113 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Sox16Q62247 57 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2aQ9Z255 152 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ighv1-63A0A075B5X2 117 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Reg3bP35230 175 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Setd2E9Q5F9 2537 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 A930009A15RikG3UYI6 118 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d1P61080 147 aaKnown RBP11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm3618D3Z4P5 127 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Q9DAB9 146 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm10401E9Q3K6 71 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm9767G3X930 207 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Rpl18aP62717 176 aaKnown RBP11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Serp2Q6TAW2 65 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Tfpi2O35536 230 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ighv1-72P01751 139 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Smrp1Q2MH31 260 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Esm1Q9QYY7 184 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 C2cd3Q52KB6 2323 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 4930564D02RikQ9D4S4 103 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d4D3YUH6 135 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Hivep2Q3UHF7 2430 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 CenpwQ3URR0 86 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d3P61079 147 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d2P62838 147 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Klk9Q32M27 251 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SrarpQ3ULG3 163 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SvipQ3UZP4 77 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SptssbQ925E8 76 aa11.33□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Ufsp1Q9CZP0 217 aa11.33□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Igkv3-10A0A0G2JGN0 119 aa11.32□□□□□ -0.6
Retrieved 100 of 22,080 RNA–protein pairs in 91.5 ms