RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PTPN12Q05209 780 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 EHHADHQ08426 723 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ELOAQ14241 798 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZC3H12AQ5D1E8 599 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 RPS26P11Q5JNZ5 115 aaPredicted RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 FRMD5Q7Z6J6 570 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 THAP5Q7Z6K1 395 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 TTC6Q86TZ1 520 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 RNF214Q8ND24 703 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 DACT3Q96B18 629 aaPredicted RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 SORCS2Q96PQ0 1159 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 GPR20Q99678 358 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 MKNK1Q9BUB5 465 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 FOXQ1Q9C009 403 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZNF576Q9H609 170 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZNF552Q9H707 407 aaPredicted RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 WDR26Q9H7D7 661 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 SP110Q9HB58 689 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 ZFYVE28Q9HCC9 887 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 SSU72Q9NP77 194 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 NOVA2Q9UNW9 492 aaKnown RBP1.67□□□□□ -2.14
VPS35-212ENST00000640313 MAPK8IP1Q9UQF2 711 aa1.67□□□□□ -2.14
VPS35-212ENST00000640313 UBTFP17480 764 aaKnown RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 TNFRSF1AP19438 455 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 RFX1P22670 979 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 USP5P45974 858 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 ERVFC1P60507 584 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 PLP2Q04941 152 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 SSPNQ14714 243 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 NOM1Q5C9Z4 860 aaKnown RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 KIAA0319Q5VV43 1072 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 HHIPL2Q6UWX4 724 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 LSRQ86X29 649 aaPredicted RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 GALNT12Q8IXK2 581 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 SP8Q8IXZ3 490 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 FNBP4Q8N3X1 1017 aaPredicted RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 SLC16A11Q8NCK7 471 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 FEZF2Q8TBJ5 459 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 RNF32Q9H0A6 362 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 SLC6A17Q9H1V8 727 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 LIN7BQ9HAP6 207 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 PRDM5Q9NQX1 630 aaPredicted RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 SLAMF8Q9P0V8 285 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 SRRDQ9UH36 339 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 FOXD3Q9UJU5 478 aaPredicted RBP1.66□□□□□ -2.14
VPS35-212ENST00000640313 TMEM59LQ9UK28 342 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 ST14Q9Y5Y6 855 aa1.66□□□□□ -2.14
VPS35-212ENST00000640313 DNAJC25-GNG10A0A024R161 153 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 SLC22A31A6NKX4 558 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 FAM155AB1AL88 458 aaPredicted RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 GSTP1P09211 210 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 EIF1AXP47813 144 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 AFF3P51826 1226 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 FLIIQ13045 1269 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 NR0B2Q15466 257 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 RALGPS1Q5JS13 557 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 CFAP70Q5T0N1 1121 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 ZFYVE27Q5T4F4 411 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 CDKAL1Q5VV42 579 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 TMEM132EQ6IEE7 984 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 ALKBH2Q6NS38 261 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 TMPRSS7Q7RTY8 843 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 ZNF605Q86T29 641 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 ZDHHC14Q8IZN3 488 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 LILRA2Q8N149 483 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 MFSD4AQ8N468 514 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 PANK1Q8TE04 598 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 CALR3Q96L12 384 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 SIGLEC10Q96LC7 697 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 MENTQ9BUN1 341 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 DNAJC25Q9H1X3 360 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 CWC22Q9HCG8 908 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 LUC7LQ9NQ29 371 aaKnown RBP1.65□□□□□ -2.15
VPS35-212ENST00000640313 PALD1Q9ULE6 856 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 ZMIZ1Q9ULJ6 1067 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 POLIQ9UNA4 740 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 CAPN6Q9Y6Q1 641 aa1.65□□□□□ -2.15
VPS35-212ENST00000640313 PRR33A8MZF0 331 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 H3BS24 57 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 MATN3O15232 486 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 CILPO75339 1184 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 ESR1P03372 595 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 POLR3DP05423 398 aaPredicted RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 NTF4P34130 210 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 TRHRP34981 398 aaPredicted RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 HK2P52789 917 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 HMGA2P52926 109 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 RING1Q06587 406 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 SNX17Q15036 470 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 SFRP5Q5T4F7 317 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 PDZD3Q86UT5 571 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 KCT2Q8NC54 265 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 PDZD8Q8NEN9 1154 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 HELQQ8TDG4 1101 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 UBE2FQ969M7 185 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 INTS4Q96HW7 963 aaKnown RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 SGPP1Q9BX95 441 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 ZC3H12CQ9C0D7 883 aaKnown RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 ADAMTS10Q9H324 1103 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 SLITRK6Q9H5Y7 841 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms