RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 CCND3P30281 292 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-208ENST00000595726 HMGCS2P54868 508 aa17.2■□□□□ 0.34
SHKBP1-208ENST00000595726 CACNB2Q08289 660 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-208ENST00000595726 ZNF697Q5TEC3 545 aa17.2■□□□□ 0.34
SHKBP1-208ENST00000595726 CACNA1FO60840 1977 aa17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 PROCA1Q8NCQ7 364 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 LPIN2Q92539 896 aa17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 LBHD1Q9BQE6 289 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 SEMA6BQ9H3T3 888 aa17.19■□□□□ 0.34
SHKBP1-208ENST00000595726 RRP1BQ14684 758 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 CCL14Q16627 93 aa17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 ZNF280CQ8ND82 737 aa17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 MYLIPQ8WY64 445 aa17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 RAPGEFL1Q9UHV5 662 aa17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 PLXNB2O15031 1838 aa17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 COL2A1P02458 1487 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-208ENST00000595726 DOCK2Q92608 1830 aa17.17■□□□□ 0.34
SHKBP1-208ENST00000595726 SENP6Q9GZR1 1112 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-208ENST00000595726 TXNRD2Q9NNW7 524 aa17.17■□□□□ 0.34
SHKBP1-208ENST00000595726 MORF4L1Q9UBU8 362 aa17.17■□□□□ 0.34
SHKBP1-208ENST00000595726 RFX7Q2KHR2 1363 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 DOCK1Q14185 1865 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 EYA2O00167 538 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 COL9A1P20849 921 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 PHKA1P46020 1223 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 ATN1P54259 1190 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 SHHQ15465 462 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 ATG9AQ7Z3C6 839 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 FAM9BQ8IZU0 186 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 P2RX7Q99572 595 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 NUDT12Q9BQG2 462 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 GAKO14976 1311 aa17.16■□□□□ 0.34
SHKBP1-208ENST00000595726 XRCC5P13010 732 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 ZKSCAN1P17029 563 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 RFX5P48382 616 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 PABPC4Q13310 644 aaKnown RBP eCLIP17.15■□□□□ 0.341e-9■■■■□ 22.8
SHKBP1-208ENST00000595726 C9orf50Q5SZB4 431 aa17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 TTYH1Q9H313 450 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 SALL1Q9NSC2 1324 aa17.15■□□□□ 0.34
SHKBP1-208ENST00000595726 BTDP43251 543 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 ATP2B3Q16720 1220 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 Q3C1V9 767 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 USP6NLQ92738 828 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 SIL1Q9H173 461 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 GNL3LQ9NVN8 582 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 ABCF2Q9UG63 623 aa17.14■□□□□ 0.33
SHKBP1-208ENST00000595726 TBC1D12O60347 775 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 DZIP1Q86YF9 867 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 GPRC5AQ8NFJ5 357 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 PORCNQ9H237 461 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 RBPJLQ9UBG7 517 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 DENND2AQ9ULE3 1009 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 MYH13Q9UKX3 1938 aa17.13■□□□□ 0.33
SHKBP1-208ENST00000595726 USP17L5A8MUK1 530 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 ADORA1P30542 326 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 CAP2P40123 477 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 RHBDL3P58872 404 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 IRX3P78415 501 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 SH3D19Q5HYK7 790 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 WDR63Q8IWG1 891 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 SOCS4Q8WXH5 440 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 USP44Q9H0E7 712 aa17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 OSBPL5Q9H0X9 879 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-208ENST00000595726 MYH2Q9UKX2 1941 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 HERVK_113P62684 666 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 JAG1P78504 1218 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 MTMR2Q13614 643 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 PDE3AQ14432 1141 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 POTEEQ6S8J3 1075 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 FAM163AQ96GL9 167 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 NDUFB9Q9Y6M9 179 aa17.11■□□□□ 0.33
SHKBP1-208ENST00000595726 LOC285556D6RIA3 1793 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 FOSL2P15408 326 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 MORN1Q5T089 497 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 GPR142Q7Z601 462 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 TRMT44Q8IYL2 757 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 ZNF384Q8TF68 577 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 SYMPKQ92797 1274 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 PAGR1Q9BTK6 254 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 FLRT1Q9NZU1 646 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 CEP126Q9P2H0 1117 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 PRKAG2Q9UGJ0 569 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 ATP11BQ9Y2G3 1177 aa17.1■□□□□ 0.33
SHKBP1-208ENST00000595726 SEMA3EO15041 775 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 MAPK4P31152 587 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 RGS2P41220 211 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 RTP1P59025 263 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 RASGRF1Q13972 1273 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 SHROOM1Q2M3G4 852 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 CCDC102BQ68D86 513 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 PLEKHH3Q7Z736 793 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 CCAR1Q8IX12 1150 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 MROH7-TTC4A0A0A0MT08 1334 aa17.09■□□□□ 0.33
SHKBP1-208ENST00000595726 GPR75-ASB3A0A0A6YYF3 556 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 CNGA1P29973 690 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 HOXA7P31268 230 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 BACE1P56817 501 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 ERVK-9P63128 1117 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms