RNA–Protein interactions for RNA: ENST00000583927.1

SKA2-208, Transcript of spindle and kinetochore associated complex subunit 2, human

TSL 2

Gene SKA2, Length 533 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SKA2-208	ENST00000583927	PPP4R3CP	Q6ZMV5	832 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	ANKRD23	Q86SG2	305 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	FAM43A	Q8N2R8	423 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	MAGEB6	Q8N7X4	407 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	TGFBRAP1	Q8WUH2	860 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	ZFYVE28	Q9HCC9	887 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	PICK1	Q9NRD5	415 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	AFG3L2	Q9Y4W6	797 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	PCDHB15	Q9Y5E8	787 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927	DOCK3	Q8IZD9	2030 aa		12.02	□□□□□ -0.49
SKA2-208	ENST00000583927		A0A0G2JLL6	359 aa	Predicted RBP	12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	TCRBV5S4A2T	A0A5A2	114 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	BTBD19	C9JJ37	291 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	TLR2	O60603	784 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	PDE6A	P16499	860 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	MOGS	Q13724	837 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	TAF1C	Q15572	869 aa	Predicted RBP	12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	SLC9C2	Q5TAH2	1124 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	PRRT2	Q7Z6L0	340 aa	Predicted RBP	12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	ERO1A	Q96HE7	468 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	RIOK1	Q9BRS2	568 aa	Known RBP	12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	PAG1	Q9NWQ8	432 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	TAOK2	Q9UL54	1235 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	SLC45A1	Q9Y2W3	748 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	NDUFB9	Q9Y6M9	179 aa		12.01	□□□□□ -0.49
SKA2-208	ENST00000583927	GOLIM4	O00461	696 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	CAP2	P40123	477 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	DYNLL1	P63167	89 aa	Known RBP	12	□□□□□ -0.49
SKA2-208	ENST00000583927	SP3	Q02447	781 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	FBXO46	Q6PJ61	603 aa	Predicted RBP	12	□□□□□ -0.49
SKA2-208	ENST00000583927	FASTKD5	Q7L8L6	764 aa	Known RBP	12	□□□□□ -0.49
SKA2-208	ENST00000583927	EHD4	Q9H223	541 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	ECHDC1	Q9NTX5	307 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	ZHX2	Q9Y6X8	837 aa		12	□□□□□ -0.49
SKA2-208	ENST00000583927	KIAA0100	Q14667	2235 aa	Known RBP	11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	HLA-DOA	P06340	250 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	ADD2	P35612	726 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	RGS19	P49795	217 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	ARHGEF6	Q15052	776 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	MAPKAPK5	Q8IW41	473 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	GPATCH3	Q96I76	525 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	YTHDC1	Q96MU7	727 aa	Known RBP	11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	DNAJC2	Q99543	621 aa	Known RBP	11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	BOLA2	Q9H3K6	86 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	DNAJC18	Q9H819	358 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	ZSWIM8	A7E2V4	1837 aa		11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	MKI67	P46013	3256 aa	Known RBP	11.99	□□□□□ -0.49
SKA2-208	ENST00000583927	TTC41P	Q6P2S7	1318 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	ADGRA2	Q96PE1	1338 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	ZNF532	Q9HCE3	1301 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	MAGEB6P1	A0A0J9YX57	407 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	SMARCA5	O60264	1052 aa	Predicted RBP	11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	ASNS	P08243	561 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	SLURP2	P0DP57	97 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	HDAC1	Q13547	482 aa	Predicted RBP	11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	UBE3C	Q15386	1083 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	ZSCAN25	Q6NSZ9	544 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	GPAT2	Q6NUI2	795 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	TATDN1	Q6P1N9	297 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	C17orf99	Q6UX52	265 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	OTOP1	Q7RTM1	612 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	MIGA1	Q8NAN2	632 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	WDR18	Q9BV38	432 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	PALD1	Q9ULE6	856 aa		11.98	□□□□□ -0.49
SKA2-208	ENST00000583927	FAM196B	A6NMK8	535 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	USP17L5	A8MUK1	530 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	PDHX	O00330	501 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	GNRH1	P01148	92 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	USP5	P45974	858 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	SH3D19	Q5HYK7	790 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	TTC6	Q86TZ1	520 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	ZNF280C	Q8ND82	737 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	GCC1	Q96CN9	775 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	CRBN	Q96SW2	442 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	SERPINB13	Q9UIV8	391 aa		11.97	□□□□□ -0.49
SKA2-208	ENST00000583927	CAPN15	O75808	1086 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	GABPA	Q06546	454 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	RRP1B	Q14684	758 aa	Known RBP	11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	KBTBD3	Q8NAB2	608 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	CD99L2	Q8TCZ2	262 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	EDC3	Q96F86	508 aa	Known RBP	11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	PARK7	Q99497	189 aa	Known RBP	11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	EFCC1	Q9HA90	598 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	AS3MT	Q9HBK9	375 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	ATP8A2	Q9NTI2	1148 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	AGTPBP1	Q9UPW5	1226 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	HPS5	Q9UPZ3	1129 aa		11.96	□□□□□ -0.49
SKA2-208	ENST00000583927	PDE4DIP	Q5VU43	2346 aa		11.95	□□□□□ -0.5
SKA2-208	ENST00000583927	SALL3	Q9BXA9	1300 aa		11.95	□□□□□ -0.5
SKA2-208	ENST00000583927	CCDC85C	A6NKD9	419 aa		11.95	□□□□□ -0.5
SKA2-208	ENST00000583927	ERC2	O15083	957 aa		11.95	□□□□□ -0.5
SKA2-208	ENST00000583927	BCR	P11274	1271 aa		11.95	□□□□□ -0.5
SKA2-208	ENST00000583927	HOXD11	P31277	338 aa	Predicted RBP	11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms