RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CLIC4Q9Y696 253 aa15.29■□□□□ 0.04
VPS4A-204ENST00000566354 KLRG2A4D1S0 409 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 TPM4P67936 248 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 TTC39AQ5SRH9 613 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 TRMT1Q9NXH9 659 aaKnown RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 POLR3DP05423 398 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 PHKA1P46020 1223 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 DPCR1Q3MIW9 517 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 MYSM1Q5VVJ2 828 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 SYNE3Q6ZMZ3 975 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 CCDC150Q8NCX0 1101 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 ERO1AQ96HE7 468 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 ORC3Q9UBD5 711 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 ZHX1Q9UKY1 873 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 ZNF215Q9UL58 517 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-204ENST00000566354 ARAP2Q8WZ64 1704 aa15.28■□□□□ 0.04
VPS4A-204ENST00000566354 CLGNO14967 610 aa15.27■□□□□ 0.04
VPS4A-204ENST00000566354 SLC3A2P08195 630 aaKnown RBP15.27■□□□□ 0.04
VPS4A-204ENST00000566354 SLC5A1P13866 664 aa15.27■□□□□ 0.04
VPS4A-204ENST00000566354 FKBP4Q02790 459 aaKnown RBP eCLIP15.27■□□□□ 0.04
VPS4A-204ENST00000566354 PI16Q6UXB8 463 aa15.27■□□□□ 0.04
VPS4A-204ENST00000566354 ZNF397Q8NF99 534 aaPredicted RBP15.27■□□□□ 0.04
VPS4A-204ENST00000566354 MORC2Q9Y6X9 1032 aaPredicted RBP15.27■□□□□ 0.04
VPS4A-204ENST00000566354 KLF18A0A0U1RQI7 1052 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 PRC1O43663 620 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 ZNF202O95125 648 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 KCNJ6P48051 423 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 NLRP12P59046 1061 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 CCDC102BQ68D86 513 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 OTUD7BQ6GQQ9 843 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 FBXW7Q969H0 707 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 RBM17Q96I25 401 aaKnown RBP15.27■□□□□ 0.03
VPS4A-204ENST00000566354 GPHNQ9NQX3 736 aaPredicted RBP15.27■□□□□ 0.03
VPS4A-204ENST00000566354 WDR19Q8NEZ3 1342 aa15.27■□□□□ 0.03
VPS4A-204ENST00000566354 AKAP11Q9UKA4 1901 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 CPLX1O14810 134 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 NRDCO43847 1150 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 FGAP02671 866 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 TUBB4AP04350 444 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 CMA1P23946 247 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 HOXA10P31260 410 aaPredicted RBP15.26■□□□□ 0.03
VPS4A-204ENST00000566354 WASHC4Q2M389 1173 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 MB21D2Q8IYB1 491 aaPredicted RBP15.26■□□□□ 0.03
VPS4A-204ENST00000566354 NCOA7Q8NI08 942 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 XPO4Q9C0E2 1151 aaKnown RBP15.26■□□□□ 0.03
VPS4A-204ENST00000566354 HPS5Q9UPZ3 1129 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 NEDD4P46934 1319 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 COL11A2P13942 1736 aaPredicted RBP15.26■□□□□ 0.03
VPS4A-204ENST00000566354 PSDA5PKW4 1024 aaPredicted RBP15.26■□□□□ 0.03
VPS4A-204ENST00000566354 GOLGA8BA8MQT2 603 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 FOXP2O15409 715 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 SRGNP10124 158 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 ANO1Q5XXA6 986 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 IFNKQ9P0W0 207 aa15.26■□□□□ 0.03
VPS4A-204ENST00000566354 SMC2O95347 1197 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 SLU7O95391 586 aaKnown RBP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 SFPQP23246 707 aaKnown RBP eCLIP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 MCAMP43121 646 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 BCAMP50895 628 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 HAND2P61296 217 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 KLRK1P26718 216 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 GABPB1Q06547 395 aaPredicted RBP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 AXDND1Q5T1B0 1012 aaPredicted RBP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 E4F1Q66K89 784 aaPredicted RBP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 RALYLQ86SE5 291 aaKnown RBP15.25■□□□□ 0.03
VPS4A-204ENST00000566354 APPBP2Q92624 585 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 TIGD1Q96MW7 591 aa15.25■□□□□ 0.03
VPS4A-204ENST00000566354 IKBKBO14920 756 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 PDE6BP35913 854 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 ZAP70P43403 619 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 UBE4AQ14139 1066 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 ARMCX5Q6P1M9 558 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 TMC6Q7Z403 805 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 CRAMP1Q96RY5 1269 aa15.24■□□□□ 0.03
VPS4A-204ENST00000566354 ZNF213O14771 459 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 ZBTB7AO95365 584 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 GYG1P46976 350 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 IRX3P78415 501 aaPredicted RBP15.23■□□□□ 0.03
VPS4A-204ENST00000566354 KIF23Q02241 960 aaPredicted RBP15.23■□□□□ 0.03
VPS4A-204ENST00000566354 NCAPHQ15003 741 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 SLC39A14Q15043 492 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 KMT5BQ4FZB7 885 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 ANKRD2Q9GZV1 360 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 L2HGDHQ9H9P8 463 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 PFKFB1P16118 471 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 ARID4AP29374 1257 aaPredicted RBP15.23■□□□□ 0.03
VPS4A-204ENST00000566354 ANTXR2P58335 489 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 ANKIB1Q9P2G1 1089 aa15.23■□□□□ 0.03
VPS4A-204ENST00000566354 KIF28PB7ZC32 967 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 BIN1O00499 593 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 NPR1P16066 1061 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 R3HDM1Q15032 1099 aaKnown RBP15.22■□□□□ 0.03
VPS4A-204ENST00000566354 SLC16A10Q8TF71 515 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 ZNF512BQ96KM6 892 aaPredicted RBP15.22■□□□□ 0.03
VPS4A-204ENST00000566354 PPP1R13BQ96KQ4 1090 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 ZNF804BA4D1E1 1349 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 CACNA1SQ13698 1873 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 MYO5AQ9Y4I1 1855 aaKnown RBP15.22■□□□□ 0.03
VPS4A-204ENST00000566354 BBOX1O75936 387 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 RASGRF1Q13972 1273 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms