RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 TRIM75PA6NK02 468 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 H0YGN5 161 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 IPO8O15397 1037 aaKnown RBP16.15■□□□□ 0.18
TPM1-220ENST00000559556 LDHCP07864 332 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 MCAMP43121 646 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 UBXN2AP68543 259 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 ATF7IPQ6VMQ6 1270 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 PROCA1Q8NCQ7 364 aaPredicted RBP16.15■□□□□ 0.18
TPM1-220ENST00000559556 OSBPL5Q9H0X9 879 aaPredicted RBP16.15■□□□□ 0.18
TPM1-220ENST00000559556 TNNQ9UQP3 1299 aa16.15■□□□□ 0.18
TPM1-220ENST00000559556 COLQQ9Y215 455 aaPredicted RBP16.15■□□□□ 0.18
TPM1-220ENST00000559556 CUL9Q8IWT3 2517 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 A0A0C4DFX4 3053 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 RLFQ13129 1914 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 FAM196BA6NMK8 535 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 IRF5Q13568 498 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 GORABQ5T7V8 394 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 TBC1D9Q6ZT07 1266 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 CCDC84Q86UT8 332 aaPredicted RBP16.14■□□□□ 0.17
TPM1-220ENST00000559556 SMCR8Q8TEV9 937 aaPredicted RBP16.14■□□□□ 0.17
TPM1-220ENST00000559556 TBC1D2Q9BYX2 928 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 RNF208Q9H0X6 261 aa16.14■□□□□ 0.17
TPM1-220ENST00000559556 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.14■□□□□ 0.17
TPM1-220ENST00000559556 BIN2Q9UBW5 565 aaPredicted RBP16.14■□□□□ 0.17
TPM1-220ENST00000559556 COL11A1P12107 1806 aaPredicted RBP16.14■□□□□ 0.17
TPM1-220ENST00000559556 ADCY3O60266 1144 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 UQCRFS1P1P0C7P4 283 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 FLT3LGP49771 235 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 FAM110CQ1W6H9 321 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 TREML2Q5T2D2 321 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 RAI14Q9P0K7 980 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 PNMA3Q9UL41 463 aa16.13■□□□□ 0.17
TPM1-220ENST00000559556 PLXNA1Q9UIW2 1896 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 TNPO2O14787 897 aaKnown RBP16.12■□□□□ 0.17
TPM1-220ENST00000559556 BCAR3O75815 825 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 G3BP1Q13283 466 aaKnown RBP eCLIP16.12■□□□□ 0.17
TPM1-220ENST00000559556 TEX11Q8IYF3 940 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 PXYLP1Q8TE99 480 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 UNC93B1Q9H1C4 597 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 GPR108Q9NPR9 543 aa16.12■□□□□ 0.17
TPM1-220ENST00000559556 HERC5Q9UII4 1024 aaKnown RBP16.12■□□□□ 0.17
TPM1-220ENST00000559556 ELNP15502 786 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 CAP2P40123 477 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 ANKRD13CQ8N6S4 541 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 ZNF280CQ8ND82 737 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 U2AF1L4Q8WU68 220 aaKnown RBP16.11■□□□□ 0.17
TPM1-220ENST00000559556 FRAT1Q92837 279 aaPredicted RBP16.11■□□□□ 0.17
TPM1-220ENST00000559556 HTATIP2Q9BUP3 242 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 A0A0G2JMZ2 1700 aa16.11■□□□□ 0.17
TPM1-220ENST00000559556 FARP2O94887 1054 aaPredicted RBP16.1■□□□□ 0.17
TPM1-220ENST00000559556 INHAP05111 366 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 CAPN2P17655 700 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 SPP2Q13103 211 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 POLA2Q14181 598 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 SH3RF3Q8TEJ3 882 aaPredicted RBP16.1■□□□□ 0.17
TPM1-220ENST00000559556 CLUAP1Q96AJ1 413 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 NOL10Q9BSC4 688 aaKnown RBP16.1■□□□□ 0.17
TPM1-220ENST00000559556 LRP2BPQ9P2M1 347 aa16.1■□□□□ 0.17
TPM1-220ENST00000559556 USP17L5A8MUK1 530 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 SGPL1O95470 568 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 GCLCP48506 637 aaPredicted RBP16.09■□□□□ 0.17
TPM1-220ENST00000559556 HMGCS2P54868 508 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 PABPC4Q13310 644 aaKnown RBP eCLIP16.09■□□□□ 0.17
TPM1-220ENST00000559556 RRP1BQ14684 758 aaKnown RBP16.09■□□□□ 0.17
TPM1-220ENST00000559556 TNNI3KQ59H18 835 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 SH3D19Q5HYK7 790 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 TMEM57Q8N5G2 664 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 SSH3Q8TE77 659 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 DPF3Q92784 378 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 COA7Q96BR5 231 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 DHX36Q9H2U1 1008 aaKnown RBP16.09■□□□□ 0.17
TPM1-220ENST00000559556 PAK6Q9NQU5 681 aaPredicted RBP16.09■□□□□ 0.17
TPM1-220ENST00000559556 FPGT-TNNI3KV9GXZ4 949 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 SMCHD1A6NHR9 2005 aa16.09■□□□□ 0.17
TPM1-220ENST00000559556 ZNF236Q9UL36 1845 aa16.08■□□□□ 0.17
TPM1-220ENST00000559556 PLCG2P16885 1265 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 PPP4CP60510 307 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 TTC39AQ5SRH9 613 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 NAA16Q6N069 864 aaPredicted RBP16.08■□□□□ 0.16
TPM1-220ENST00000559556 CHRDL2Q6WN34 429 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 METTL16Q86W50 562 aaKnown RBP16.08■□□□□ 0.16
TPM1-220ENST00000559556 ZNF512BQ96KM6 892 aaPredicted RBP16.08■□□□□ 0.16
TPM1-220ENST00000559556 AS3MTQ9HBK9 375 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 AATFQ9NY61 560 aaKnown RBP eCLIP16.08■□□□□ 0.16
TPM1-220ENST00000559556 PI4KBQ9UBF8 816 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 FLT1P17948 1338 aa16.08■□□□□ 0.16
TPM1-220ENST00000559556 IGSF3O75054 1194 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 BAG3O95817 575 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 CYP2E1P05181 493 aaPredicted RBP16.07■□□□□ 0.16
TPM1-220ENST00000559556 ASNSP08243 561 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 ZKSCAN2Q63HK3 967 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 ADGRA1Q86SQ6 560 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 DBNDD2Q9BQY9 259 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 WDR18Q9BV38 432 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 ASCC2Q9H1I8 757 aaPredicted RBP16.07■□□□□ 0.16
TPM1-220ENST00000559556 PRO3102Q9H379 93 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 DNAJC18Q9H819 358 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 SNRKQ9NRH2 765 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 MYH4Q9Y623 1939 aa16.07■□□□□ 0.16
TPM1-220ENST00000559556 CCDC158Q5M9N0 1113 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms