RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 PALLDQ8WX93 1383 aa10.01□□□□□ -0.81
SPG11-213ENST00000558988 TUBGCP6Q96RT7 1819 aa10□□□□□ -0.81
SPG11-213ENST00000558988 ANKRD26Q9UPS8 1709 aa10□□□□□ -0.81
SPG11-213ENST00000558988 KRTAP9-7A8MTY7 169 aa10□□□□□ -0.81
SPG11-213ENST00000558988 POLD1P28340 1107 aa10□□□□□ -0.81
SPG11-213ENST00000558988 EIF4A2Q14240 407 aaKnown RBP10□□□□□ -0.81
SPG11-213ENST00000558988 ASIC4Q96FT7 647 aa10□□□□□ -0.81
SPG11-213ENST00000558988 SYT17Q9BSW7 474 aa10□□□□□ -0.81
SPG11-213ENST00000558988 C7orf69Q9H7B7 122 aa10□□□□□ -0.81
SPG11-213ENST00000558988 TBC1D2BQ9UPU7 963 aa10□□□□□ -0.81
SPG11-213ENST00000558988 LY75O60449 1722 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 TOGARAM1Q9Y4F4 1720 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 HIRAP54198 1017 aaPredicted RBP9.99□□□□□ -0.81
SPG11-213ENST00000558988 MLLT1Q03111 559 aaPredicted RBP9.99□□□□□ -0.81
SPG11-213ENST00000558988 IRF5Q13568 498 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 RNF43Q68DV7 783 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 TRIM42Q8IWZ5 723 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 SMG9Q9H0W8 520 aaKnown RBP9.99□□□□□ -0.81
SPG11-213ENST00000558988 KNSTRNQ9Y448 316 aa9.99□□□□□ -0.81
SPG11-213ENST00000558988 PSMA6P60900 246 aaKnown RBP9.98□□□□□ -0.81
SPG11-213ENST00000558988 GTF2IP78347 998 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 GPR162Q16538 588 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 SMIM5Q71RC9 77 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 PIGBQ92521 554 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 DBNDD2Q9BQY9 259 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 TMOD3Q9NYL9 352 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 PKD1L3Q7Z443 1732 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 ITGB4P16144 1822 aa9.98□□□□□ -0.81
SPG11-213ENST00000558988 C5P01031 1676 aa9.97□□□□□ -0.81
SPG11-213ENST00000558988 HMX2A2RU54 273 aa9.97□□□□□ -0.81
SPG11-213ENST00000558988 VAC14Q08AM6 782 aa9.97□□□□□ -0.81
SPG11-213ENST00000558988 SPOCD1Q6ZMY3 1216 aa9.97□□□□□ -0.81
SPG11-213ENST00000558988 COL23A1Q86Y22 540 aaPredicted RBP9.97□□□□□ -0.81
SPG11-213ENST00000558988 SMARCC1Q92922 1105 aaPredicted RBP9.97□□□□□ -0.81
SPG11-213ENST00000558988 PHKG2P15735 406 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 ZNF530Q6P9A1 599 aaPredicted RBP9.96□□□□□ -0.82
SPG11-213ENST00000558988 IFNL2Q8IZJ0 200 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 TRPM4Q8TD43 1214 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 ASAP1Q9ULH1 1129 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 KIF7Q2M1P5 1343 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 QSER1Q2KHR3 1735 aa9.96□□□□□ -0.82
SPG11-213ENST00000558988 MAP3K6O95382 1288 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 CC2D1BQ5T0F9 858 aaKnown RBP9.95□□□□□ -0.82
SPG11-213ENST00000558988 LCE5AQ5TCM9 118 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 DHX32Q7L7V1 743 aaKnown RBP9.95□□□□□ -0.82
SPG11-213ENST00000558988 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.95□□□□□ -0.82
SPG11-213ENST00000558988 AEBP1Q8IUX7 1158 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 NLGN2Q8NFZ4 835 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 ZFATQ9P243 1243 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 WWC3Q9ULE0 1092 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 NCAPD2Q15021 1401 aa9.95□□□□□ -0.82
SPG11-213ENST00000558988 IGSF1Q8N6C5 1336 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 LOC102724428A0A0B4J2F2 783 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 SIK1P57059 783 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 CBLL1Q75N03 491 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 TSPAN10Q9H1Z9 355 aaPredicted RBP9.94□□□□□ -0.82
SPG11-213ENST00000558988 NOD1Q9Y239 953 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 CHMP3Q9Y3E7 222 aa9.94□□□□□ -0.82
SPG11-213ENST00000558988 TAF1LQ8IZX4 1826 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 C4BP0C0L5 1744 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 HOXA10P31260 410 aaPredicted RBP9.93□□□□□ -0.82
SPG11-213ENST00000558988 SETDB1Q15047 1291 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 EML3Q32P44 896 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 PLEKHO1Q53GL0 409 aaPredicted RBP9.93□□□□□ -0.82
SPG11-213ENST00000558988 C1orf141Q5JVX7 400 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 SULT6B1Q6IMI4 303 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 HFE2Q6ZVN8 426 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 AMIGO3Q86WK7 504 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 LINC00116Q8NCU8 138 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 SHKBP1Q8TBC3 707 aa9.93□□□□□ -0.82
SPG11-213ENST00000558988 PIK3CDO00329 1044 aa9.92□□□□□ -0.82
SPG11-213ENST00000558988 CABP4P57796 275 aa9.92□□□□□ -0.82
SPG11-213ENST00000558988 ITPK1Q13572 414 aa9.92□□□□□ -0.82
SPG11-213ENST00000558988 UTP4Q969X6 686 aaKnown RBP9.92□□□□□ -0.82
SPG11-213ENST00000558988 ATG3Q9NT62 314 aa9.92□□□□□ -0.82
SPG11-213ENST00000558988 HMOX1P09601 288 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 MTHFSP49914 203 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 GPLD1P80108 840 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 KRTAP5-3Q6L8H2 238 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 KRT25Q7Z3Z0 450 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 FLAD1Q8NFF5 587 aa9.91□□□□□ -0.82
SPG11-213ENST00000558988 MAP3K5Q99683 1374 aa9.9□□□□□ -0.82
SPG11-213ENST00000558988 HSP90AB1P08238 724 aaKnown RBP9.9□□□□□ -0.82
SPG11-213ENST00000558988 GRNP28799 593 aaKnown RBP9.9□□□□□ -0.82
SPG11-213ENST00000558988 IL22RA1Q8N6P7 574 aa9.9□□□□□ -0.82
SPG11-213ENST00000558988 SRA1Q9HD15 236 aaKnown RBP9.9□□□□□ -0.82
SPG11-213ENST00000558988 KDM6AO15550 1401 aaPredicted RBP9.9□□□□□ -0.83
SPG11-213ENST00000558988 UBR3Q6ZT12 1888 aa9.89□□□□□ -0.83
SPG11-213ENST00000558988 ITGB5P18084 799 aa9.89□□□□□ -0.83
SPG11-213ENST00000558988 HMGB2P26583 209 aaKnown RBP9.89□□□□□ -0.83
SPG11-213ENST00000558988 ZNF124Q15973 351 aa9.89□□□□□ -0.83
SPG11-213ENST00000558988 AMOTQ4VCS5 1084 aa9.89□□□□□ -0.83
SPG11-213ENST00000558988 ZNF648Q5T619 568 aaPredicted RBP9.89□□□□□ -0.83
SPG11-213ENST00000558988 ALDH16A1Q8IZ83 802 aa9.89□□□□□ -0.83
SPG11-213ENST00000558988 ANGEL1Q9UNK9 670 aaKnown RBP9.89□□□□□ -0.83
SPG11-213ENST00000558988 CHD4Q14839 1912 aa9.88□□□□□ -0.83
SPG11-213ENST00000558988 ERVV-2B6SEH9 535 aa9.88□□□□□ -0.83
SPG11-213ENST00000558988 U2SURPO15042 1029 aaKnown RBP9.88□□□□□ -0.83
SPG11-213ENST00000558988 EIF2AK2P19525 551 aaKnown RBP9.88□□□□□ -0.83
SPG11-213ENST00000558988 TARSP26639 723 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms