RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 DENND2AQ9ULE3 1009 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 ERCC3P19447 782 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 CYP2C19P33261 490 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 MAN1B1Q9UKM7 699 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 MACROD2A1Z1Q3 448 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 PATL2C9JE40 543 aaKnown RBP14.7□□□□□ -0.06
MSH6-210ENST00000540021 PHKG2P15735 406 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 MCM7P33993 719 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 RBL2Q08999 1139 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 RILPL1Q5EBL4 403 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 IL17RAQ96F46 866 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 CTAGE1Q96RT6 745 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 C19orf44Q9H6X5 657 aa14.7□□□□□ -0.06
MSH6-210ENST00000540021 MROH7-TTC4A0A0A0MT08 1334 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 PIP4K2BP78356 416 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 CCDC122Q5T0U0 273 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 CNGA4Q8IV77 575 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 NPHP4O75161 1426 aaPredicted RBP14.69□□□□□ -0.06
MSH6-210ENST00000540021 UBE2Q2LH0YL09 131 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 TRIM66O15016 1216 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 TMOD3Q9NYL9 352 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 RIMS1Q86UR5 1692 aaKnown RBP14.69□□□□□ -0.06
MSH6-210ENST00000540021 ZMYM6O95789 1325 aa14.69□□□□□ -0.06
MSH6-210ENST00000540021 TSPOAP1O95153 1857 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 PRR29P0C7W0 189 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 MTIF2P46199 727 aaKnown RBP14.68□□□□□ -0.06
MSH6-210ENST00000540021 SCARF1Q14162 830 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 SPA17Q15506 151 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 ARHGEF25Q86VW2 580 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 KIAA0754O94854 1291 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 H2AFXP16104 143 aaPredicted RBP14.68□□□□□ -0.06
MSH6-210ENST00000540021 ITGA6P23229 1130 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 SRGAP1Q7Z6B7 1085 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 CATIPQ7Z7H3 387 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.68□□□□□ -0.06
MSH6-210ENST00000540021 PXDNLA1KZ92 1463 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 TEX33O43247 280 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 TTC31Q49AM3 519 aaPredicted RBP14.68□□□□□ -0.06
MSH6-210ENST00000540021 CTCFLQ8NI51 663 aaPredicted RBP14.68□□□□□ -0.06
MSH6-210ENST00000540021 L2HGDHQ9H9P8 463 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 PARP3Q9Y6F1 533 aa14.68□□□□□ -0.06
MSH6-210ENST00000540021 V9GY48 417 aaPredicted RBP14.68□□□□□ -0.06
MSH6-210ENST00000540021 PDE4BQ07343 736 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 ILDR1Q86SU0 546 aaPredicted RBP14.67□□□□□ -0.06
MSH6-210ENST00000540021 KRT23Q9C075 422 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 CSRNP2Q9H175 543 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 SUGCTQ9HAC7 445 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 ABCB6Q9NP58 842 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.67□□□□□ -0.06
MSH6-210ENST00000540021 PCDHB6Q9Y5E3 794 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 ANKRD26Q9UPS8 1709 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 PREX1Q8TCU6 1659 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 CDC27P30260 824 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 BRD3Q15059 726 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 CCDC96Q2M329 555 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 METTL16Q86W50 562 aaKnown RBP14.67□□□□□ -0.06
MSH6-210ENST00000540021 IQCA1Q86XH1 822 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 IPO4Q8TEX9 1081 aaKnown RBP14.67□□□□□ -0.06
MSH6-210ENST00000540021 TMEM87BQ96K49 555 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 SHTN1A0MZ66 631 aa14.67□□□□□ -0.06
MSH6-210ENST00000540021 RRP15Q9Y3B9 282 aaKnown RBP14.67□□□□□ -0.06
MSH6-210ENST00000540021 MYO1CO00159 1063 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 STARD3NLO95772 234 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 SLC5A1P13866 664 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 CYP7A1P22680 504 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 CDC23Q9UJX2 597 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 NCAPH2Q6IBW4 605 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 CYB5R4Q7L1T6 521 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 SENP2Q9HC62 589 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 LUC7L2Q9Y383 392 aaKnown RBP14.66□□□□□ -0.06
MSH6-210ENST00000540021 PLEKHG1Q9ULL1 1385 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 SSBP05455 408 aaKnown RBP eCLIP14.66□□□□□ -0.06
MSH6-210ENST00000540021 STAT6P42226 847 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 MNAT1P51948 309 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 PDIA6Q15084 440 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 IFIT1BQ5T764 474 aaKnown RBP14.66□□□□□ -0.06
MSH6-210ENST00000540021 EPSTI1Q96J88 318 aa14.66□□□□□ -0.06
MSH6-210ENST00000540021 PPP6R2O75170 966 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 UBA7P41226 1012 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 FMR1Q06787 632 aaKnown RBP eCLIP14.65□□□□□ -0.069e-7■■■■□ 21.8
MSH6-210ENST00000540021 TBC1D10CQ8IV04 446 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 SYNE4Q8N205 404 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 RNF41Q9H4P4 317 aaPredicted RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 CCDC151A5D8V7 595 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 SNAP23O00161 211 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 ZEB2O60315 1214 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 RNF187Q5TA31 235 aaPredicted RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 GOLGA5Q8TBA6 731 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 ZCRB1Q8TBF4 217 aaKnown RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 AFAP1L1Q8TED9 768 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 BPIFA3Q9BQP9 254 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 CDC25AP30304 524 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 ACTN2P35609 894 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 TDRD12Q587J7 1177 aaKnown RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 CCDC178Q5BJE1 867 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 TTC19Q6DKK2 380 aaPredicted RBP14.65□□□□□ -0.06
MSH6-210ENST00000540021 ZHX3Q9H4I2 956 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 CNNM2Q9H8M5 875 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 FAM204AQ9H8W3 233 aa14.65□□□□□ -0.06
MSH6-210ENST00000540021 MRPL44Q9H9J2 332 aaKnown RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms