RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CEMIPQ8WUJ3 1361 aa5.26□□□□□ -1.57
CD44-226ENST00000527889 COL5A3P25940 1745 aaPredicted RBP5.26□□□□□ -1.57
CD44-226ENST00000527889 EIF1AYO14602 144 aaKnown RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 KCNQ3O43525 872 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 ADH1AP07327 375 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 RLBP1P12271 317 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 BMP2P12643 396 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 RACK1P63244 317 aaKnown RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 RELBQ01201 579 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 MLLT1Q03111 559 aaPredicted RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 ORC1Q13415 861 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 GNL2Q13823 731 aaKnown RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 TAF7Q15545 349 aaPredicted RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 TWISTNBQ3B726 338 aaPredicted RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 NOP9Q86U38 636 aaKnown RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 NBPF15Q8N660 670 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 IFT43Q96FT9 208 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 CARD10Q9BWT7 1032 aa5.25□□□□□ -1.57
CD44-226ENST00000527889 FHDC1Q9C0D6 1143 aaPredicted RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 DDX41Q9UJV9 622 aaKnown RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.25□□□□□ -1.57
CD44-226ENST00000527889 DISP2A7MBM2 1401 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 LY75O60449 1722 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 DLL1O00548 723 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 CYP27B1O15528 508 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 SPINT1O43278 529 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 PHKG2P15735 406 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 GTF2F1P35269 517 aaKnown RBP eCLIP5.24□□□□□ -1.57
CD44-226ENST00000527889 BAG6P46379 1132 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 TEFQ10587 303 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 SCARF1Q14162 830 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 ALDH1L2Q3SY69 923 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 ZNF394Q53GI3 561 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 ZKSCAN2Q63HK3 967 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 TICAM2Q86XR7 235 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 JMYQ8N9B5 988 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 CCDC136Q96JN2 1154 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 TSEN34Q9BSV6 310 aaKnown RBP5.24□□□□□ -1.57
CD44-226ENST00000527889 PHACTR1Q9C0D0 580 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 DNAJC25Q9H1X3 360 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 ZNF395Q9H8N7 513 aaPredicted RBP5.24□□□□□ -1.57
CD44-226ENST00000527889 SENP2Q9HC62 589 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 NOB1Q9ULX3 412 aaKnown RBP5.24□□□□□ -1.57
CD44-226ENST00000527889 ZNF232Q9UNY5 417 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 SPG7Q9UQ90 795 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 THSD7AQ9UPZ6 1657 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 TAF1P21675 1872 aa5.24□□□□□ -1.57
CD44-226ENST00000527889 PITPNM2Q9BZ72 1349 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 SLIT2O94813 1529 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 BTBD11A6QL63 1104 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 OPLAHO14841 1288 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 TRIM27P14373 513 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 IL2RBP14784 551 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 DNAJA1P31689 397 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 CTSOP43234 321 aaPredicted RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 PTPN12Q05209 780 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 CLN3Q13286 438 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 PDE3AQ14432 1141 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 CCDC144BQ3MJ40 725 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 ATF7IPQ6VMQ6 1270 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 TREML1Q86YW5 311 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 FTSJ3Q8IY81 847 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 IFNL2Q8IZJ0 200 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 ZNF654Q8IZM8 581 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 ZCRB1Q8TBF4 217 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 GPR152Q8TDT2 470 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 KIFC2Q96AC6 838 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 NAP1L5Q96NT1 182 aaPredicted RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 INSM2Q96T92 566 aaPredicted RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 SPON1Q9HCB6 807 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 SRA1Q9HD15 236 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 DNMT3LQ9UJW3 386 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 TRPC5Q9UL62 973 aaPredicted RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 PCDHGB7Q9Y5F8 929 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 PARP3Q9Y6F1 533 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 NHSQ6T4R5 1651 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 MYO5AQ9Y4I1 1855 aaKnown RBP5.23□□□□□ -1.57
CD44-226ENST00000527889 MYH7P12883 1935 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 KCPQ6ZWJ8 1503 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 KIF16BQ96L93 1317 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 PCDH11XQ9BZA7 1347 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 PCDH11YQ9BZA8 1340 aa5.23□□□□□ -1.57
CD44-226ENST00000527889 BCORQ6W2J9 1755 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 PLEKHG2Q9H7P9 1386 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 A6NHS1 94 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 PCSK2P16519 638 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 EIF4BP23588 611 aaKnown RBP5.22□□□□□ -1.57
CD44-226ENST00000527889 PTGIRP43119 386 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 EIF4A1P60842 406 aaKnown RBP5.22□□□□□ -1.57
CD44-226ENST00000527889 CENPCQ03188 943 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 ARID5AQ03989 594 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 RBL2Q08999 1139 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 SLC39A6Q13433 755 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 C1orf53Q5VUE5 145 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 G2E3Q7L622 706 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 USP48Q86UV5 1035 aa5.22□□□□□ -1.57
CD44-226ENST00000527889 DZIP1LQ8IYY4 767 aaKnown RBP5.22□□□□□ -1.57
CD44-226ENST00000527889 DDX54Q8TDD1 881 aaKnown RBP5.22□□□□□ -1.57
CD44-226ENST00000527889 ZNF775Q96BV0 537 aaPredicted RBP5.22□□□□□ -1.57
CD44-226ENST00000527889 USP21Q9UK80 565 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms