RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EIF6P56537 245 aaKnown RBP24.72■■□□□ 1.55
VPS28-208ENST00000527797 ST3GAL1Q11201 340 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 TTC6Q86TZ1 520 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 ZNF287Q9HBT7 754 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 PDIA3P30101 505 aaKnown RBP24.72■■□□□ 1.55
VPS28-208ENST00000527797 LIFRP42702 1097 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 GTF3C6Q969F1 213 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 CHMP4CQ96CF2 233 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 DYNLL2Q96FJ2 89 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 UBAC1Q9BSL1 405 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 IDI2Q9BXS1 227 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 SMC3Q9UQE7 1217 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 NAV1Q8NEY1 1877 aa24.71■■□□□ 1.55
VPS28-208ENST00000527797 KLF18A0A0U1RQI7 1052 aa24.71■■□□□ 1.55
VPS28-208ENST00000527797 FZD9O00144 591 aa24.71■■□□□ 1.55
VPS28-208ENST00000527797 DLGAP5Q15398 846 aa24.71■■□□□ 1.55
VPS28-208ENST00000527797 OSBPL5Q9H0X9 879 aaPredicted RBP24.71■■□□□ 1.55
VPS28-208ENST00000527797 LAMB1P07942 1786 aa24.7■■□□□ 1.55
VPS28-208ENST00000527797 RPS12P25398 132 aaKnown RBP24.7■■□□□ 1.54
VPS28-208ENST00000527797 MMP14P50281 582 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 TMTC2Q8N394 836 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 PRMT6Q96LA8 375 aaPredicted RBP24.7■■□□□ 1.54
VPS28-208ENST00000527797 ZKSCAN3Q9BRR0 538 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 TDRD3Q9H7E2 651 aaKnown RBP24.7■■□□□ 1.54
VPS28-208ENST00000527797 LY9Q9HBG7 655 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 MKNK2Q9HBH9 465 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 BRPF3Q9ULD4 1205 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 ADAMTSL1Q8N6G6 1762 aa24.7■■□□□ 1.54
VPS28-208ENST00000527797 NPM3O75607 178 aaKnown RBP24.69■■□□□ 1.54
VPS28-208ENST00000527797 NFIAQ12857 509 aa24.69■■□□□ 1.54
VPS28-208ENST00000527797 WTAPQ15007 396 aa24.69■■□□□ 1.54
VPS28-208ENST00000527797 NFXL1Q6ZNB6 911 aa24.69■■□□□ 1.54
VPS28-208ENST00000527797 SGMS1Q86VZ5 419 aa24.69■■□□□ 1.54
VPS28-208ENST00000527797 IQCA1Q86XH1 822 aa24.69■■□□□ 1.54
VPS28-208ENST00000527797 SPDYE2BA6NHP3 402 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 SPDYE6P0CI01 402 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 NUCB2P80303 420 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 SCRN1Q12765 414 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 C16orf86Q6ZW13 317 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 CCDC69A6NI79 296 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 LMNB1P20700 586 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 ZNF444Q8N0Y2 327 aaPredicted RBP24.68■■□□□ 1.54
VPS28-208ENST00000527797 ZSCAN10Q96SZ4 725 aaPredicted RBP24.68■■□□□ 1.54
VPS28-208ENST00000527797 TMOD2Q9NZR1 351 aa24.68■■□□□ 1.54
VPS28-208ENST00000527797 TSPY2A6NKD2 308 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 GOLGA8BA8MQT2 603 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 HLA-DOAP06340 250 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 CDK8P49336 464 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 CACNB3P54284 484 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 MTMR14Q8NCE2 650 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 DHX36Q9H2U1 1008 aaKnown RBP24.67■■□□□ 1.54
VPS28-208ENST00000527797 TNKSO95271 1327 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 CDK5RAP2Q96SN8 1893 aa24.67■■□□□ 1.54
VPS28-208ENST00000527797 CCT2P78371 535 aaKnown RBP24.66■■□□□ 1.54
VPS28-208ENST00000527797 FAM47AQ5JRC9 791 aa24.66■■□□□ 1.54
VPS28-208ENST00000527797 SYNE3Q6ZMZ3 975 aa24.66■■□□□ 1.54
VPS28-208ENST00000527797 LLPHQ9BRT6 129 aaKnown RBP24.66■■□□□ 1.54
VPS28-208ENST00000527797 SENP2Q9HC62 589 aa24.66■■□□□ 1.54
VPS28-208ENST00000527797 FAM198AQ9UFP1 575 aa24.66■■□□□ 1.54
VPS28-208ENST00000527797 DDX60LQ5H9U9 1706 aaKnown RBP24.66■■□□□ 1.54
VPS28-208ENST00000527797 GJB2P29033 226 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 TFAP4Q01664 338 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 SEC23AQ15436 765 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 SLC44A5Q8NCS7 719 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 SLC12A7Q9Y666 1083 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 GJA3Q9Y6H8 435 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 FOCADQ5VW36 1801 aa24.65■■□□□ 1.54
VPS28-208ENST00000527797 ENTPD3O75355 529 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 TCP10Q12799 353 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 RAB3GAP1Q15042 981 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 APOA5Q6Q788 366 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 DPF2Q92785 391 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 HPS5Q9UPZ3 1129 aa24.64■■□□□ 1.54
VPS28-208ENST00000527797 DHX16O60231 1041 aaKnown RBP24.64■■□□□ 1.53
VPS28-208ENST00000527797 RASA1P20936 1047 aa24.64■■□□□ 1.53
VPS28-208ENST00000527797 ZFPM1Q8IX07 1006 aa24.64■■□□□ 1.53
VPS28-208ENST00000527797 ZNF70Q9UC06 446 aaPredicted RBP24.64■■□□□ 1.53
VPS28-208ENST00000527797 SERPINB13Q9UIV8 391 aa24.64■■□□□ 1.53
VPS28-208ENST00000527797 ZBTB43O43298 467 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 TSPY3P0CV98 308 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 TSPY8P0CW00 308 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 GMPSP49915 693 aaPredicted RBP24.63■■□□□ 1.53
VPS28-208ENST00000527797 ZNF280AP59817 542 aaPredicted RBP24.63■■□□□ 1.53
VPS28-208ENST00000527797 CCDC178Q5BJE1 867 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 ENAHQ8N8S7 591 aaPredicted RBP24.63■■□□□ 1.53
VPS28-208ENST00000527797 NCOA5Q9HCD5 579 aaKnown RBP24.63■■□□□ 1.53
VPS28-208ENST00000527797 MYOZ2Q9NPC6 264 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 SWAP70Q9UH65 585 aa24.63■■□□□ 1.53
VPS28-208ENST00000527797 MYO1BO43795 1136 aa24.62■■□□□ 1.53
VPS28-208ENST00000527797 YBX3P16989 372 aaKnown RBP eCLIP24.62■■□□□ 1.531e-7■□□□□ 9.8
VPS28-208ENST00000527797 METAP2P50579 478 aaKnown RBP eCLIP24.62■■□□□ 1.53
VPS28-208ENST00000527797 GABPAQ06546 454 aa24.62■■□□□ 1.53
VPS28-208ENST00000527797 IFIT1BQ5T764 474 aaKnown RBP24.62■■□□□ 1.53
VPS28-208ENST00000527797 EHD4Q9H223 541 aa24.62■■□□□ 1.53
VPS28-208ENST00000527797 ZNF541Q9H0D2 1346 aa24.62■■□□□ 1.53
VPS28-208ENST00000527797 SPDYE2Q495Y8 402 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 RAB11FIP4Q86YS3 637 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 ZSCAN29Q8IWY8 852 aaPredicted RBP24.61■■□□□ 1.53
VPS28-208ENST00000527797 ZBED3Q96IU2 234 aaPredicted RBP24.61■■□□□ 1.53
VPS28-208ENST00000527797 TCP11L1Q9NUJ3 509 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms