RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 PRDM10Q9NQV6 1147 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 PICK1Q9NRD5 415 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 TMEM265A0A087WTH1 108 aa9.54□□□□□ -0.88
NUP54-209ENST00000510569 IGF2BP3O00425 579 aaKnown RBP eCLIP9.54□□□□□ -0.88
NUP54-209ENST00000510569 CD8BP10966 210 aa9.54□□□□□ -0.88
NUP54-209ENST00000510569 PTPN11Q06124 597 aaPredicted RBP9.54□□□□□ -0.88
NUP54-209ENST00000510569 LRFN4Q6PJG9 635 aa9.54□□□□□ -0.88
NUP54-209ENST00000510569 ELMO3Q96BJ8 720 aa9.54□□□□□ -0.88
NUP54-209ENST00000510569 INPP5AQ14642 412 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 ZNF792Q3KQV3 632 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 ARHGAP27Q6ZUM4 889 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 CYFIP1Q7L576 1253 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 HRASLS5Q96KN8 279 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 GTF2IRD1Q9UHL9 959 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 AK5Q9Y6K8 562 aa9.53□□□□□ -0.88
NUP54-209ENST00000510569 RPS26P62854 115 aaKnown RBP9.52□□□□□ -0.89
NUP54-209ENST00000510569 TTBK2Q6IQ55 1244 aa9.52□□□□□ -0.89
NUP54-209ENST00000510569 ARMCX6Q7L4S7 300 aa9.52□□□□□ -0.89
NUP54-209ENST00000510569 ASIC4Q96FT7 647 aa9.52□□□□□ -0.89
NUP54-209ENST00000510569 SNX11Q9Y5W9 270 aa9.52□□□□□ -0.89
NUP54-209ENST00000510569 ANKRD33BA6NCL7 494 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 LRIG2O94898 1065 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 PAPLNO95428 1278 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 CAP2P40123 477 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 AOC3Q16853 763 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 CDC37L1Q7L3B6 337 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 HDXQ7Z353 690 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 ZNF507Q8TCN5 953 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 PLPPR2Q96GM1 343 aa9.51□□□□□ -0.89
NUP54-209ENST00000510569 DUSP9Q99956 384 aaKnown RBP9.51□□□□□ -0.89
NUP54-209ENST00000510569 EOMESO95936 686 aa9.5□□□□□ -0.89
NUP54-209ENST00000510569 ITIH2P19823 946 aa9.5□□□□□ -0.89
NUP54-209ENST00000510569 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.5□□□□□ -0.89
NUP54-209ENST00000510569 SPACA3Q8IXA5 215 aa9.5□□□□□ -0.89
NUP54-209ENST00000510569 SNCAIPQ9Y6H5 919 aa9.5□□□□□ -0.89
NUP54-209ENST00000510569 PRAMEF27A3QJZ7 478 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 CD96P40200 585 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 CCDC85BQ15834 202 aaPredicted RBP9.49□□□□□ -0.89
NUP54-209ENST00000510569 EAPPQ56P03 285 aaPredicted RBP9.49□□□□□ -0.89
NUP54-209ENST00000510569 WNT10AQ9GZT5 417 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 MBNL3Q9NUK0 354 aaKnown RBP9.49□□□□□ -0.89
NUP54-209ENST00000510569 RNF19AQ9NV58 838 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 ADAMTS6Q9UKP5 1117 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 MAPK8IP1Q9UQF2 711 aa9.49□□□□□ -0.89
NUP54-209ENST00000510569 WIPI1Q5MNZ9 446 aaPredicted RBP9.48□□□□□ -0.89
NUP54-209ENST00000510569 ANGEL2Q5VTE6 544 aaKnown RBP9.48□□□□□ -0.89
NUP54-209ENST00000510569 FBRSQ9HAH7 460 aa9.48□□□□□ -0.89
NUP54-209ENST00000510569 RNASE1P07998 156 aaKnown RBP9.47□□□□□ -0.89
NUP54-209ENST00000510569 SLBPQ14493 270 aaKnown RBP eCLIP9.47□□□□□ -0.89
NUP54-209ENST00000510569 NKPD1Q17RQ9 610 aa9.47□□□□□ -0.89
NUP54-209ENST00000510569 AGMOQ6ZNB7 445 aa9.47□□□□□ -0.89
NUP54-209ENST00000510569 C22orf34Q6ZV56 151 aa9.47□□□□□ -0.89
NUP54-209ENST00000510569 NPAS4Q8IUM7 802 aa9.47□□□□□ -0.89
NUP54-209ENST00000510569 FOXQ1Q9C009 403 aa9.47□□□□□ -0.89
NUP54-209ENST00000510569 PRDM5Q9NQX1 630 aaPredicted RBP9.47□□□□□ -0.89
NUP54-209ENST00000510569 SLITRK5O94991 958 aa9.46□□□□□ -0.9
NUP54-209ENST00000510569 YBX3P16989 372 aaKnown RBP eCLIP9.46□□□□□ -0.9
NUP54-209ENST00000510569 CDK8P49336 464 aa9.46□□□□□ -0.9
NUP54-209ENST00000510569 CLCN7P51798 805 aa9.46□□□□□ -0.9
NUP54-209ENST00000510569 DNAJC14Q6Y2X3 702 aaPredicted RBP9.46□□□□□ -0.9
NUP54-209ENST00000510569 ATG4DQ86TL0 474 aaPredicted RBP9.46□□□□□ -0.9
NUP54-209ENST00000510569 RC3H2Q9HBD1 1191 aaKnown RBP9.46□□□□□ -0.9
NUP54-209ENST00000510569 TACC3Q9Y6A5 838 aa9.46□□□□□ -0.9
NUP54-209ENST00000510569 GNAT3A8MTJ3 354 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 BIN1O00499 593 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 LIG3P49916 1009 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 NKG7Q16617 165 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 OGFOD2Q6N063 350 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 ASB11Q8WXH4 323 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 PCDHB5Q9Y5E4 795 aa9.45□□□□□ -0.9
NUP54-209ENST00000510569 GFRA2O00451 464 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 ETF1P62495 437 aaKnown RBP9.44□□□□□ -0.9
NUP54-209ENST00000510569 SEPT6Q14141 434 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 SLC23A3Q6PIS1 610 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 POU5F2Q8N7G0 328 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 MFSD2AQ8NA29 543 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 LRRN4CLQ8ND94 238 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 PI4K2BQ8TCG2 481 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 PITPNM2Q9BZ72 1349 aa9.44□□□□□ -0.9
NUP54-209ENST00000510569 ZNF865P0CJ78 1059 aaPredicted RBP9.43□□□□□ -0.9
NUP54-209ENST00000510569 DAB2P98082 770 aa9.43□□□□□ -0.9
NUP54-209ENST00000510569 MEI1Q5TIA1 1274 aa9.43□□□□□ -0.9
NUP54-209ENST00000510569 AEBP1Q8IUX7 1158 aa9.43□□□□□ -0.9
NUP54-209ENST00000510569 HID1Q8IV36 788 aa9.43□□□□□ -0.9
NUP54-209ENST00000510569 PARP2Q9UGN5 583 aa9.43□□□□□ -0.9
NUP54-209ENST00000510569 CARMIL2Q6F5E8 1435 aa9.42□□□□□ -0.9
NUP54-209ENST00000510569 ST13P50502 369 aaKnown RBP9.42□□□□□ -0.9
NUP54-209ENST00000510569 MIPEPQ99797 713 aa9.42□□□□□ -0.9
NUP54-209ENST00000510569 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.42□□□□□ -0.9
NUP54-209ENST00000510569 CST3P01034 146 aaPredicted RBP9.41□□□□□ -0.9
NUP54-209ENST00000510569 PDIA4P13667 645 aaKnown RBP9.41□□□□□ -0.9
NUP54-209ENST00000510569 TFE3P19532 575 aaPredicted RBP9.41□□□□□ -0.9
NUP54-209ENST00000510569 GRK4P32298 578 aa9.41□□□□□ -0.9
NUP54-209ENST00000510569 FLAD1Q8NFF5 587 aa9.41□□□□□ -0.9
NUP54-209ENST00000510569 NOC4LQ9BVI4 516 aaKnown RBP9.41□□□□□ -0.9
NUP54-209ENST00000510569 MIR1-1HGQ9H1L0 117 aa9.41□□□□□ -0.9
NUP54-209ENST00000510569 RLBP1P12271 317 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 LMNB1P20700 586 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 PSMD2Q13200 908 aa9.4□□□□□ -0.9
NUP54-209ENST00000510569 IKZF1Q13422 519 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms