RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ENTPD3O75355 529 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 REC8O95072 547 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 SEC24BO95487 1268 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 FKBP1CQ5VVH2 108 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 STK11IPQ8N1F8 1099 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 FAM151AQ8WW52 585 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 LSG1Q9H089 658 aaKnown RBP20.51■□□□□ 0.87
LIME1-208ENST00000493265 GBA2Q9HCG7 927 aaPredicted RBP20.51■□□□□ 0.87
LIME1-208ENST00000493265 DDTLA6NHG4 134 aaPredicted RBP20.5■□□□□ 0.87
LIME1-208ENST00000493265 USP17L12C9JPN9 530 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 USP17L21D6R901 530 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 FGAP02671 866 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 MLLT1Q03111 559 aaPredicted RBP20.5■□□□□ 0.87
LIME1-208ENST00000493265 FAM83AQ86UY5 434 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 CDAN1Q8IWY9 1227 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 AMOTL1Q8IY63 956 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 DSCC1Q9BVC3 393 aa20.5■□□□□ 0.87
LIME1-208ENST00000493265 BAZ2AQ9UIF9 1905 aaKnown RBP20.5■□□□□ 0.87
LIME1-208ENST00000493265 RPAP1Q9BWH6 1393 aaPredicted RBP20.49■□□□□ 0.87
LIME1-208ENST00000493265 EVX2Q03828 476 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 DGKZQ13574 1117 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 RGMBQ6NW40 437 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 CTR9Q6PD62 1173 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 SH3BP5LQ7L8J4 393 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 C2orf69Q8N8R5 385 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 RBM8AQ9Y5S9 174 aaKnown RBP20.49■□□□□ 0.87
LIME1-208ENST00000493265 MYH1P12882 1939 aa20.49■□□□□ 0.87
LIME1-208ENST00000493265 SMIM22K7EJ46 135 aa20.48■□□□□ 0.87
LIME1-208ENST00000493265 NPM3O75607 178 aaKnown RBP20.48■□□□□ 0.87
LIME1-208ENST00000493265 HAND2P61296 217 aa20.48■□□□□ 0.87
LIME1-208ENST00000493265 GIMAP6Q6P9H5 292 aa20.48■□□□□ 0.87
LIME1-208ENST00000493265 CSRNP1Q96S65 589 aa20.48■□□□□ 0.87
LIME1-208ENST00000493265 U3KPZ7 1027 aaPredicted RBP20.48■□□□□ 0.87
LIME1-208ENST00000493265 FAM155AB1AL88 458 aaPredicted RBP20.47■□□□□ 0.87
LIME1-208ENST00000493265 HLA-DOAP06340 250 aa20.47■□□□□ 0.87
LIME1-208ENST00000493265 PLCD1P51178 756 aa20.47■□□□□ 0.87
LIME1-208ENST00000493265 ALX1Q15699 326 aa20.47■□□□□ 0.87
LIME1-208ENST00000493265 NBPF12Q5TAG4 269 aaPredicted RBP20.47■□□□□ 0.87
LIME1-208ENST00000493265 MAP4K1Q92918 833 aa20.47■□□□□ 0.87
LIME1-208ENST00000493265 ARPP21Q9UBL0 812 aaPredicted RBP20.47■□□□□ 0.87
LIME1-208ENST00000493265 CTNNA3Q9UI47 895 aa20.47■□□□□ 0.87
LIME1-208ENST00000493265 SLURP2P0DP57 97 aa20.46■□□□□ 0.87
LIME1-208ENST00000493265 ZNF157P51786 506 aaPredicted RBP20.46■□□□□ 0.87
LIME1-208ENST00000493265 CTDSPL2Q05D32 466 aa20.46■□□□□ 0.87
LIME1-208ENST00000493265 TTC6Q86TZ1 520 aa20.46■□□□□ 0.87
LIME1-208ENST00000493265 CRACR2BQ8N4Y2 399 aaPredicted RBP20.46■□□□□ 0.87
LIME1-208ENST00000493265 TEPSINQ96N21 525 aa20.46■□□□□ 0.87
LIME1-208ENST00000493265 TRIM34Q9BYJ4 488 aa20.46■□□□□ 0.87
LIME1-208ENST00000493265 DHX36Q9H2U1 1008 aaKnown RBP20.46■□□□□ 0.87
LIME1-208ENST00000493265 DDX60LQ5H9U9 1706 aaKnown RBP20.46■□□□□ 0.87
LIME1-208ENST00000493265 FAM196BA6NMK8 535 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 RGS19P49795 217 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 KIF23Q02241 960 aaPredicted RBP20.45■□□□□ 0.86
LIME1-208ENST00000493265 PPARAQ07869 468 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 C12orf60Q5U649 245 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 MIGA2Q7L4E1 593 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 CDCA5Q96FF9 252 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 DYNLL2Q96FJ2 89 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 PPP2R3BQ9Y5P8 575 aa20.45■□□□□ 0.86
LIME1-208ENST00000493265 ZNF213O14771 459 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 PRKG1Q13976 671 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 IMMTQ16891 758 aaKnown RBP20.44■□□□□ 0.86
LIME1-208ENST00000493265 SBK1Q52WX2 424 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 CCDC102AQ96A19 550 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 USP26Q9BXU7 913 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 BACH2Q9BYV9 841 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 ATRNL1Q5VV63 1379 aa20.44■□□□□ 0.86
LIME1-208ENST00000493265 EIF5BO60841 1220 aaKnown RBP20.43■□□□□ 0.86
LIME1-208ENST00000493265 PI4KBQ9UBF8 816 aa20.43■□□□□ 0.86
LIME1-208ENST00000493265 FZD1Q9UP38 647 aa20.43■□□□□ 0.86
LIME1-208ENST00000493265 ZMYM6O95789 1325 aa20.43■□□□□ 0.86
LIME1-208ENST00000493265 LAMB1P07942 1786 aa20.43■□□□□ 0.86
LIME1-208ENST00000493265 COL2A1P02458 1487 aaPredicted RBP20.43■□□□□ 0.86
LIME1-208ENST00000493265 SUPT20HL1Q3ZLR7 823 aa20.42■□□□□ 0.86
LIME1-208ENST00000493265 CREB3L3Q68CJ9 461 aa20.42■□□□□ 0.86
LIME1-208ENST00000493265 SLC44A5Q8NCS7 719 aa20.42■□□□□ 0.86
LIME1-208ENST00000493265 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.42■□□□□ 0.865e-6■■■□□ 17
LIME1-208ENST00000493265 INCENPQ9NQS7 918 aa20.42■□□□□ 0.86
LIME1-208ENST00000493265 TOMM22Q9NS69 142 aa20.42■□□□□ 0.86
LIME1-208ENST00000493265 SLC27A2O14975 620 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 TRPA1O75762 1119 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 SLC3A2P08195 630 aaKnown RBP20.41■□□□□ 0.86
LIME1-208ENST00000493265 SLC10A3P09131 477 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 NF2P35240 595 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 TTLL12Q14166 644 aaPredicted RBP20.41■□□□□ 0.86
LIME1-208ENST00000493265 SAGE1Q9NXZ1 904 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.41■□□□□ 0.86
LIME1-208ENST00000493265 SERPINB13Q9UIV8 391 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 TAF6LQ9Y6J9 622 aa20.41■□□□□ 0.86
LIME1-208ENST00000493265 SIPA1L1O43166 1804 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 PRDM1O75626 825 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 CYP21A2P08686 494 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 MCCP23508 829 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 NECTIN1Q15223 517 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 RRP12Q5JTH9 1297 aaKnown RBP20.4■□□□□ 0.86
LIME1-208ENST00000493265 TBC1D10CQ8IV04 446 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 FOXP4Q8IVH2 680 aaPredicted RBP20.4■□□□□ 0.86
LIME1-208ENST00000493265 HOOK2Q96ED9 719 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 NBPF3Q9H094 633 aa20.4■□□□□ 0.86
LIME1-208ENST00000493265 UPF2Q9HAU5 1272 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms