RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 NLRP3Q96P20 1036 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 BAZ2AQ9UIF9 1905 aaKnown RBP17.14■□□□□ 0.33
SF1-211ENST00000448404 ZNF804BA4D1E1 1349 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 PLA2G4DQ86XP0 818 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 ENAHQ8N8S7 591 aaPredicted RBP17.14■□□□□ 0.33
SF1-211ENST00000448404 STAG1Q8WVM7 1258 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 CICQ96RK0 1608 aaPredicted RBP17.13■□□□□ 0.33
SF1-211ENST00000448404 PTPAQ15257 358 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 CLEC4GQ6UXB4 293 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 FAM196AQ6ZSG2 479 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 PCDHB6Q9Y5E3 794 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 C4AP0C0L4 1744 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 A0A0U1RQG5 324 aaPredicted RBP17.13■□□□□ 0.33
SF1-211ENST00000448404 TRIM29Q14134 588 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 RASGRP2Q7LDG7 609 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 KCNG4Q8TDN1 519 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 MAP3K14Q99558 947 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 LRRC4BQ9NT99 713 aa17.13■□□□□ 0.33
SF1-211ENST00000448404 SLC39A14Q15043 492 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 CTR9Q6PD62 1173 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 CPLX2Q6PUV4 134 aaKnown RBP17.12■□□□□ 0.33
SF1-211ENST00000448404 BRAPQ7Z569 592 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 FANCBQ8NB91 859 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 KIAA1524Q8TCG1 905 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 NSUN4Q96CB9 384 aaKnown RBP17.12■□□□□ 0.33
SF1-211ENST00000448404 KRT23Q9C075 422 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 KIAA1468Q9P260 1216 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 NARFQ9UHQ1 456 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 USP17L8P0C7I0 530 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 LIFRP42702 1097 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 NBPF11Q86T75 865 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 ANKIB1Q9P2G1 1089 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 RTCBQ9Y3I0 505 aaKnown RBP17.12■□□□□ 0.33
SF1-211ENST00000448404 PNPLA7Q6ZV29 1317 aa17.12■□□□□ 0.33
SF1-211ENST00000448404 ERICH2A1L162 156 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 YEATS4O95619 227 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 SLC3A2P08195 630 aaKnown RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 UBE4AQ14139 1066 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 ZNF827Q17R98 1081 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 LONRF3Q496Y0 759 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 DYNLL2Q96FJ2 89 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 GNL3LQ9NVN8 582 aaKnown RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 MYH15Q9Y2K3 1946 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 RPS6KA4O75676 772 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 FMNL1O95466 1100 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 ATP1A3P13637 1013 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 TM4SF1P30408 202 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 HIBADHP31937 336 aaKnown RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 VPS72Q15906 364 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 CRACR2BQ8N4Y2 399 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 CABP5Q9NP86 173 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 V9GY48 417 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 WDR19Q8NEZ3 1342 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 CDKL5O76039 1030 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 CASP1P29466 404 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 LMOD1P29536 600 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 FOXP4Q8IVH2 680 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 SLC44A5Q8NCS7 719 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 C16orf45Q96MC5 204 aaPredicted RBP17.11■□□□□ 0.33
SF1-211ENST00000448404 MYH2Q9UKX2 1941 aa17.11■□□□□ 0.33
SF1-211ENST00000448404 USP27XA6NNY8 438 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 SYKP43405 635 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 SEC23AQ15436 765 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 CNNM2Q9H8M5 875 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 IFNAR1P17181 557 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 FBXO33Q7Z6M2 555 aa17.1■□□□□ 0.33
SF1-211ENST00000448404 A0A1W2PQ27 194 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 A0A1W2PQ64 194 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 A0A1W2PQD8 194 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 RFC4P35249 363 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 GOLGA8FQ08AF8 430 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 GOLGA8DPQ0D2H9 430 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 SART3Q15020 963 aaKnown RBP17.09■□□□□ 0.33
SF1-211ENST00000448404 NOSTRINQ8IVI9 506 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 ANO10Q9NW15 660 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 RTL9Q8NET4 1388 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 MMP1P03956 469 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 TPTE2Q6XPS3 522 aa17.09■□□□□ 0.33
SF1-211ENST00000448404 GNAT2P19087 354 aa17.08■□□□□ 0.33
SF1-211ENST00000448404 U2AF2P26368 475 aaKnown RBP eCLIP17.08■□□□□ 0.333e-8■■■■■ 38.7
SF1-211ENST00000448404 IFIT1BQ5T764 474 aaKnown RBP17.08■□□□□ 0.33
SF1-211ENST00000448404 CEP57L1Q8IYX8 460 aa17.08■□□□□ 0.33
SF1-211ENST00000448404 ZSCAN10Q96SZ4 725 aaPredicted RBP17.08■□□□□ 0.33
SF1-211ENST00000448404 CPVLQ9H3G5 476 aa17.08■□□□□ 0.33
SF1-211ENST00000448404 DCP1AQ9NPI6 582 aaPredicted RBP17.08■□□□□ 0.33
SF1-211ENST00000448404 PRR29P0C7W0 189 aa17.08■□□□□ 0.32
SF1-211ENST00000448404 CMA1P23946 247 aa17.08■□□□□ 0.32
SF1-211ENST00000448404 ATL3Q6DD88 541 aa17.08■□□□□ 0.32
SF1-211ENST00000448404 ESR2Q92731 530 aa17.08■□□□□ 0.32
SF1-211ENST00000448404 TRMT1Q9NXH9 659 aaKnown RBP17.08■□□□□ 0.32
SF1-211ENST00000448404 SAP30BPQ9UHR5 308 aaKnown RBP17.08■□□□□ 0.32
SF1-211ENST00000448404 CTAGE5O15320 804 aa17.07■□□□□ 0.32
SF1-211ENST00000448404 SMC2O95347 1197 aa17.07■□□□□ 0.32
SF1-211ENST00000448404 ZRSR1Q15695 479 aaKnown RBP17.07■□□□□ 0.32
SF1-211ENST00000448404 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
SF1-211ENST00000448404 METTL16Q86W50 562 aaKnown RBP17.07■□□□□ 0.32
SF1-211ENST00000448404 TRIM22Q8IYM9 498 aa17.07■□□□□ 0.32
SF1-211ENST00000448404 PRDM10Q9NQV6 1147 aa17.07■□□□□ 0.32
SF1-211ENST00000448404 MCM9Q9NXL9 1143 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms