RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 A0A1B0GVL5 298 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 NFKBIEO00221 500 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 CTDNEP1O95476 244 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 ZSCAN26Q16670 478 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 HDAC5Q9UQL6 1122 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 DALRD3Q5D0E6 543 aaKnown RBP9.86□□□□□ -0.83
HPS4-206ENST00000439453 PLA2G12BQ9BX93 195 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 SIL1Q9H173 461 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 RASSF4Q9H2L5 321 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 IRS4O14654 1257 aaPredicted RBP9.85□□□□□ -0.83
HPS4-206ENST00000439453 NDUFA8P51970 172 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 FANCCQ00597 558 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 NCAPHQ15003 741 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 EPHA10Q5JZY3 1008 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 ADALQ6DHV7 355 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 REXO1L1PQ8IX06 675 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 TTLL6Q8N841 843 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 EDC3Q96F86 508 aaKnown RBP9.85□□□□□ -0.83
HPS4-206ENST00000439453 EPC1Q9H2F5 836 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 BCS1LQ9Y276 419 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 U3KPZ7 1027 aaPredicted RBP9.85□□□□□ -0.83
HPS4-206ENST00000439453 SCN9AQ15858 1988 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 RTL9Q8NET4 1388 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 A0A1W2PQ27 194 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 A0A1W2PQ64 194 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 A0A1W2PQD8 194 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 NLRP12P59046 1061 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 FOXO4P98177 505 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 GUCY1B3Q02153 619 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 CCDC34Q96HJ3 373 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 BIN1O00499 593 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 CYP21A2P08686 494 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 GPR161Q8N6U8 529 aaKnown RBP9.85□□□□□ -0.83
HPS4-206ENST00000439453 CRAMP1Q96RY5 1269 aa9.85□□□□□ -0.83
HPS4-206ENST00000439453 LMOD1P29536 600 aaPredicted RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 GPR162Q16538 588 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 RTEL1Q9NZ71 1219 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 CWC15Q9P013 229 aaKnown RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 SLC3A2P08195 630 aaKnown RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 UBE3BQ7Z3V4 1068 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 SUCLG2Q96I99 432 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 SEC62Q99442 399 aaKnown RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 TMX1Q9H3N1 280 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 RSPH14Q9UHP6 348 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 ARAP2Q8WZ64 1704 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 MYO1CO00159 1063 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 CCT2P78371 535 aaKnown RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 RASSF7Q02833 373 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 APOBRQ0VD83 1088 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 CCDC129Q6ZRS4 1044 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 ZNF622Q969S3 477 aaKnown RBP eCLIP9.84□□□□□ -0.832e-6■□□□□ 11.1
HPS4-206ENST00000439453 BICC1Q9H694 974 aaKnown RBP9.84□□□□□ -0.83
HPS4-206ENST00000439453 EFCC1Q9HA90 598 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 ARFGAP3Q9NP61 516 aa9.84□□□□□ -0.83
HPS4-206ENST00000439453 NEDD4P46934 1319 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 ZSCAN12O43309 604 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 CSF1RP07333 972 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 C10orf67Q8IYJ2 551 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 TTLL11Q8NHH1 800 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 CELF1Q92879 486 aaKnown RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 MPHOSPH8Q99549 860 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 LCMT1Q9UIC8 334 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 C21orf2O43822 256 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 CTSWP56202 376 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 GNL2Q13823 731 aaKnown RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 STK38Q15208 465 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 SF3A1Q15459 793 aaKnown RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 STOX1Q6ZVD7 989 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 DHX32Q7L7V1 743 aaKnown RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 FCHSD1Q86WN1 690 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 FBXO18Q8NFZ0 1043 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 GOLGA5Q8TBA6 731 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 EXOC4Q96A65 974 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 NLRP3Q96P20 1036 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 SEC31BQ9NQW1 1179 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 VWA3AA6NCI4 1184 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 IKBKBO14920 756 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 TRIM66O15016 1216 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 PDE8AO60658 829 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 PPFIA3O75145 1194 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 ATP1A3P13637 1013 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 CASQ1P31415 396 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 NEXNQ0ZGT2 675 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 FAM177A1Q8N128 213 aaPredicted RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 LINC00301Q8NCQ3 95 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 CNKSR1Q969H4 720 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 FUT8Q9BYC5 575 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 NCOA5Q9HCD5 579 aaKnown RBP9.83□□□□□ -0.84
HPS4-206ENST00000439453 PSD3Q9NYI0 1048 aa9.83□□□□□ -0.84
HPS4-206ENST00000439453 SALL1Q9NSC2 1324 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GRM8O00222 908 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 HMGB1P09429 215 aaKnown RBP9.82□□□□□ -0.84
HPS4-206ENST00000439453 GYS2P54840 703 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 MAP3K9P80192 1104 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 PPP2R3AQ06190 1150 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 RSRC2Q7L4I2 434 aaKnown RBP9.82□□□□□ -0.84
HPS4-206ENST00000439453 DPF2Q92785 391 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 PARD6BQ9BYG5 372 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 LAMA4Q16363 1823 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 LTBP3Q9NS15 1303 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms