RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ILDR2Q71H61 639 aa11□□□□□ -0.65
CUX1-206ENST00000437600 NLGN1Q8N2Q7 840 aa11□□□□□ -0.65
CUX1-206ENST00000437600 LINC00301Q8NCQ3 95 aa11□□□□□ -0.65
CUX1-206ENST00000437600 SLC26A6Q9BXS9 759 aa11□□□□□ -0.65
CUX1-206ENST00000437600 PRDM4Q9UKN5 801 aa11□□□□□ -0.65
CUX1-206ENST00000437600 BAZ2BQ9UIF8 2168 aaKnown RBP11□□□□□ -0.65
CUX1-206ENST00000437600 GSG1L2A8MUP6 293 aa11□□□□□ -0.65
CUX1-206ENST00000437600 PRDX5P30044 214 aa11□□□□□ -0.65
CUX1-206ENST00000437600 SLC10A5Q5PT55 438 aa11□□□□□ -0.65
CUX1-206ENST00000437600 IGDCC4Q8TDY8 1250 aa11□□□□□ -0.65
CUX1-206ENST00000437600 ZNF396Q96N95 335 aaPredicted RBP11□□□□□ -0.65
CUX1-206ENST00000437600 PPP1R1BQ9UD71 204 aaPredicted RBP11□□□□□ -0.65
CUX1-206ENST00000437600 PARP3Q9Y6F1 533 aa11□□□□□ -0.65
CUX1-206ENST00000437600 RGPD3A6NKT7 1758 aaPredicted RBP11□□□□□ -0.65
CUX1-206ENST00000437600 RGPD4Q7Z3J3 1758 aa11□□□□□ -0.65
CUX1-206ENST00000437600 COL1A1P02452 1464 aaPredicted RBP11□□□□□ -0.65
CUX1-206ENST00000437600 BECN2A8MW95 431 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 CHRNA5P30532 468 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 MYSM1Q5VVJ2 828 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 ENGASEQ8NFI3 743 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 RPGRQ92834 1020 aaKnown RBP10.99□□□□□ -0.65
CUX1-206ENST00000437600 LAMA4Q16363 1823 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 SPTLC2O15270 562 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 RANBP6O60518 1105 aaKnown RBP10.99□□□□□ -0.65
CUX1-206ENST00000437600 KRT40Q6A162 431 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 ZNF384Q8TF68 577 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 FAM217BQ9NTX9 383 aaPredicted RBP10.99□□□□□ -0.65
CUX1-206ENST00000437600 KIF3AQ9Y496 699 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 RTL9Q8NET4 1388 aa10.99□□□□□ -0.65
CUX1-206ENST00000437600 PATL2C9JE40 543 aaKnown RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 GOLGA6L19H0YKK7 550 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 UBE4AQ14139 1066 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 DPCR1Q3MIW9 517 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 AOPEPQ8N6M6 819 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 IPO4Q8TEX9 1081 aaKnown RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 CLIP2Q9UDT6 1046 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 LRP5O75197 1615 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 BTBD18B2RXH4 712 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 ZBTB43O43298 467 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 DHX16O60231 1041 aaKnown RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 FAM160A1Q05DH4 1040 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 GNL3LQ9NVN8 582 aaKnown RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 ZNF804BA4D1E1 1349 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 MYH7P12883 1935 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 GOLGA8AA7E2F4 631 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 SH2B2O14492 632 aaPredicted RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 ZNF75DP51815 510 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 EVCP57679 992 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 KIF23Q02241 960 aaPredicted RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 IQCB1Q15051 598 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 MFSD6Q6ZSS7 791 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 CACTINQ8WUQ7 758 aaKnown RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 C16orf45Q96MC5 204 aaPredicted RBP10.98□□□□□ -0.65
CUX1-206ENST00000437600 LY9Q9HBG7 655 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 AATFQ9NY61 560 aaKnown RBP eCLIP10.98□□□□□ -0.651e-6■■■■■ 27.8
CUX1-206ENST00000437600 SLC12A7Q9Y666 1083 aa10.98□□□□□ -0.65
CUX1-206ENST00000437600 ZNF202O95125 648 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 HIBADHP31937 336 aaKnown RBP10.97□□□□□ -0.65
CUX1-206ENST00000437600 IARSP41252 1262 aaKnown RBP10.97□□□□□ -0.65
CUX1-206ENST00000437600 GRIN1Q05586 938 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 FMR1NBQ8N0W7 255 aaPredicted RBP10.97□□□□□ -0.65
CUX1-206ENST00000437600 KIAA1524Q8TCG1 905 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 MRPS27Q92552 414 aaKnown RBP10.97□□□□□ -0.65
CUX1-206ENST00000437600 ZNF622Q969S3 477 aaKnown RBP eCLIP10.97□□□□□ -0.651e-7■■□□□ 13.1
CUX1-206ENST00000437600 MTMR7Q9Y216 660 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 NR5A1Q13285 461 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 ANO1Q5XXA6 986 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 ADALQ6DHV7 355 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 RBM43Q6ZSC3 357 aaKnown RBP10.97□□□□□ -0.65
CUX1-206ENST00000437600 FLAD1Q8NFF5 587 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 RTEL1Q9NZ71 1219 aa10.97□□□□□ -0.65
CUX1-206ENST00000437600 CCDC69A6NI79 296 aa10.96□□□□□ -0.65
CUX1-206ENST00000437600 FOXN1O15353 648 aa10.96□□□□□ -0.65
CUX1-206ENST00000437600 GRIK5Q16478 980 aa10.96□□□□□ -0.65
CUX1-206ENST00000437600 PDILTQ8N807 584 aa10.96□□□□□ -0.65
CUX1-206ENST00000437600 TRMT1Q9NXH9 659 aaKnown RBP10.96□□□□□ -0.65
CUX1-206ENST00000437600 COL11A2P13942 1736 aaPredicted RBP10.96□□□□□ -0.65
CUX1-206ENST00000437600 NMT2O60551 498 aa10.96□□□□□ -0.66
CUX1-206ENST00000437600 NTRK3Q16288 839 aa10.96□□□□□ -0.66
CUX1-206ENST00000437600 DHX40Q8IX18 779 aaKnown RBP10.96□□□□□ -0.66
CUX1-206ENST00000437600 ZNF592Q92610 1267 aa10.96□□□□□ -0.66
CUX1-206ENST00000437600 A0A1B0GUL6 1792 aa10.96□□□□□ -0.66
CUX1-206ENST00000437600 MAGEB6P1A0A0J9YX57 407 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 MECOMQ03112 1051 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 AKNAD1Q5T1N1 836 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 OXER1Q8TDS5 423 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 PFKFB1P16118 471 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 PNOCQ13519 176 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 DIXDC1Q155Q3 683 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 AXDND1Q5T1B0 1012 aaPredicted RBP10.95□□□□□ -0.66
CUX1-206ENST00000437600 MROH7-TTC4A0A0A0MT08 1334 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 FAM205CA6NFA0 338 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 USP27XA6NNY8 438 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 LMOD1P29536 600 aaPredicted RBP10.95□□□□□ -0.66
CUX1-206ENST00000437600 GRAPQ13588 217 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 FBXO33Q7Z6M2 555 aa10.95□□□□□ -0.66
CUX1-206ENST00000437600 GRAPLQ8TC17 118 aaPredicted RBP10.95□□□□□ -0.66
CUX1-206ENST00000437600 ZFP91Q96JP5 570 aaPredicted RBP10.95□□□□□ -0.66
CUX1-206ENST00000437600 SRGNP10124 158 aa10.94□□□□□ -0.66
CUX1-206ENST00000437600 NAA30Q147X3 362 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms