RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 TRIM42Q8IWZ5 723 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 SMG8Q8ND04 991 aaKnown RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 RGS22Q8NE09 1264 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 CEP44Q9C0F1 390 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ZFYVE1Q9HBF4 777 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 CFDP1Q9UEE9 299 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 CSADQ9Y600 493 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 SCAPERQ9BY12 1400 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 DHX15O43143 795 aaKnown RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 HCLS1P14317 486 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ARNTP27540 789 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 FGD1P98174 961 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 BEND4Q6ZU67 534 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 FRMD6Q96NE9 622 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 TTC37Q6PGP7 1564 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 LRRIQ1Q96JM4 1722 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 GPATCH8Q9UKJ3 1502 aaKnown RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 TMPRSS2O15393 492 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 DYNC1LI2O43237 492 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 USP11P51784 963 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 SEPT6Q14141 434 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 LLGL2Q6P1M3 1020 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 FAM20CQ8IXL6 584 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ZNF428Q96B54 188 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 STOML1Q9UBI4 398 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 DAGLAQ9Y4D2 1042 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 PCDHB5Q9Y5E4 795 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ARHGAP5Q13017 1502 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 EHBP1L1Q8N3D4 1523 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 ADGRL1O94910 1474 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 LRRC9Q6ZRR7 1453 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 DCDC2CA8MYV0 355 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 MAP4P27816 1152 aaKnown RBP3.78□□□□□ -1.8
VPS13A-208ENST00000423463 CDK8P49336 464 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 MRPL58Q14197 206 aaKnown RBP3.78□□□□□ -1.8
VPS13A-208ENST00000423463 TAF1CQ15572 869 aaPredicted RBP3.78□□□□□ -1.8
VPS13A-208ENST00000423463 UVSSAQ2YD98 709 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 GAL3ST3Q96A11 431 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 SEMA6CQ9H3T2 930 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 C7orf69Q9H7B7 122 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 PCDHGC5Q9Y5F6 944 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 TIAM1Q13009 1591 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 CFAP74Q9C0B2 1584 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 KIAA1107Q9UPP5 1409 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 NFICP08651 508 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 H2AFB1P0C5Y9 115 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 H2AFB2P0C5Z0 115 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 ASPAP45381 313 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 TTLL4Q14679 1199 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 SHISA5Q8N114 240 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 FBXL6Q8N531 539 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 AFAP1Q8N556 730 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 FANCD2OSQ96PS1 177 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 PCDHA4Q9UN74 947 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 RAXQ9Y2V3 346 aa3.78□□□□□ -1.8
VPS13A-208ENST00000423463 NCOA2Q15596 1464 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 MAGI2Q86UL8 1455 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 PLEKHH2Q8IVE3 1493 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 LIG3P49916 1009 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 HNRNPMP52272 730 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS13A-208ENST00000423463 INPP5AQ14642 412 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 C12orf40Q86WS4 652 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 MFSD14AQ96MC6 490 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 CRIM1Q9NZV1 1036 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 POGZQ7Z3K3 1410 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 PRAMEF27A3QJZ7 478 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 ID3Q02535 119 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 NFKBIBQ15653 356 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 TSNAXIP1Q2TAA8 658 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 KIF4BQ2VIQ3 1234 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 PPM1JQ5JR12 505 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 HP1BP3Q5SSJ5 553 aaPredicted RBP3.77□□□□□ -1.81
VPS13A-208ENST00000423463 BACH2Q9BYV9 841 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 DISC1Q9NRI5 854 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 KRT82Q9NSB4 513 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 MYO5CQ9NQX4 1742 aa3.77□□□□□ -1.81
VPS13A-208ENST00000423463 ZNF644Q9H582 1327 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-208ENST00000423463 FAM95CA0A1B0GW59 222 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 EIF4EBP3O60516 100 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-208ENST00000423463 SLFN14P0C7P3 912 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 TFE3P19532 575 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-208ENST00000423463 FSTP19883 344 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 LDLRAD1Q5T700 205 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 SV2BQ7L1I2 683 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 UBE3DQ7Z6J8 389 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 EMILIN2Q9BXX0 1053 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 PIDD1Q9HB75 910 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 COPRSQ9NQ92 184 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 SAMM50Q9Y512 469 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 USP31Q70CQ4 1352 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 ZNF518AQ6AHZ1 1483 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 SPAG9O60271 1321 aaKnown RBP3.76□□□□□ -1.81
VPS13A-208ENST00000423463 MIA2Q96PC5 1412 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 TRAPPC8Q9Y2L5 1435 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 UNCXA6NJT0 531 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 NEFMP07197 916 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 LMNB1P20700 586 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 FAM160A1Q05DH4 1040 aa3.76□□□□□ -1.81
VPS13A-208ENST00000423463 NFIAQ12857 509 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms