RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RAD51AP2Q09MP3 1159 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 VAT1LQ9HCJ6 419 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 PPP2R2CQ9Y2T4 447 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 KIF28PB7ZC32 967 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 WDHD1O75717 1129 aaPredicted RBP13.53□□□□□ -0.24
HMGB1-206ENST00000405805 MCM7P33993 719 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 FMR1NBQ8N0W7 255 aaPredicted RBP13.53□□□□□ -0.24
HMGB1-206ENST00000405805 PLEKHA4Q9H4M7 779 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 CEMIPQ8WUJ3 1361 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 LRRN4CLQ8ND94 238 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 CRACR2AQ9BSW2 395 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 SAMSN1Q9NSI8 373 aaKnown RBP13.53□□□□□ -0.24
HMGB1-206ENST00000405805 ZNHIT6Q9NWK9 470 aaKnown RBP13.53□□□□□ -0.24
HMGB1-206ENST00000405805 V9GY48 417 aaPredicted RBP13.53□□□□□ -0.24
HMGB1-206ENST00000405805 KIF23Q02241 960 aaPredicted RBP13.52□□□□□ -0.24
HMGB1-206ENST00000405805 E4F1Q66K89 784 aaPredicted RBP13.52□□□□□ -0.24
HMGB1-206ENST00000405805 PSMB7Q99436 277 aa13.52□□□□□ -0.24
HMGB1-206ENST00000405805 IMPACTQ9P2X3 320 aa13.52□□□□□ -0.24
HMGB1-206ENST00000405805 TCHHQ07283 1943 aa13.52□□□□□ -0.24
HMGB1-206ENST00000405805 TRIM75PA6NK02 468 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 MYO1CO00159 1063 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 TRIM66O15016 1216 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CMA1P23946 247 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CDC25AP30304 524 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CCZ1BP86790 482 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CCZ1P86791 482 aaPredicted RBP13.52□□□□□ -0.25
HMGB1-206ENST00000405805 GOLGA1Q92805 767 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 JADE2Q9NQC1 790 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CEP131Q9UPN4 1083 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC196A0A1B0GTZ2 297 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 ATP2B2Q01814 1243 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 POSTNQ15063 836 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 ATL3Q6DD88 541 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 UIMC1Q96RL1 719 aa13.52□□□□□ -0.25
HMGB1-206ENST00000405805 KIF4AO95239 1232 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 IGHMBP2P38935 993 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 PHKA1P46020 1223 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC24Q8N4L8 307 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 PPM1EQ8WY54 764 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 SCLT1Q96NL6 688 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 SLF1Q9BQI6 1058 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 ZNF609O15014 1411 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 RIMS1Q86UR5 1692 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 SLC5A1P13866 664 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 SMC1AQ14683 1233 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 WWC2Q6AWC2 1192 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 ANKRD7Q92527 254 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 AKR1B15C9JRZ8 316 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 PRKAB2O43741 272 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 CLNS1AP54105 237 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 CTCFLQ8NI51 663 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC47Q96A33 483 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 PAIP2Q9BPZ3 127 aaKnown RBP13.51□□□□□ -0.25
HMGB1-206ENST00000405805 TAB2Q9NYJ8 693 aa13.51□□□□□ -0.25
HMGB1-206ENST00000405805 ARHGAP6O43182 974 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 PDIA6Q15084 440 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 IQCA1Q86XH1 822 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 SDR42E1Q8WUS8 393 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTNND2Q9UQB3 1225 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 RRP15Q9Y3B9 282 aaKnown RBP13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CHMP4BP1P59074 171 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 SLC39A14Q15043 492 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 BRINP3Q76B58 766 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 GREM2Q9H772 168 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC181Q5TID7 509 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CATIPQ7Z7H3 387 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 SENP2Q9HC62 589 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTAGE15A4D2H0 777 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 NBPF26B4DH59 902 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTAGE8P0CG41 777 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 FDPSP14324 419 aaKnown RBP13.5□□□□□ -0.25
HMGB1-206ENST00000405805 LIG3P49916 1009 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 NBPF14Q5TI25 921 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 SPECC1LQ69YQ0 1117 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 NBPF10Q6P3W6 841 aaKnown RBP13.5□□□□□ -0.25
HMGB1-206ENST00000405805 APOA5Q6Q788 366 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTAGE6Q86UF2 777 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTAGE4Q8IX94 777 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 NBPF15Q8N660 670 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 WWC3Q9ULE0 1092 aa13.5□□□□□ -0.25
HMGB1-206ENST00000405805 CTAGE9A4FU28 777 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 PNMA6AP0CW24 399 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 GCKP35557 465 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 TTF1Q15361 905 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 ZNF335Q9H4Z2 1342 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 SOWAHDA6NJG2 315 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 ZMYND10O75800 440 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 IDEP14735 1019 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 MTF1Q14872 753 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 IFIT1BQ5T764 474 aaKnown RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 PRPF38AQ8NAV1 312 aaKnown RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 TRIM47Q96LD4 638 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 VIRMAQ69YN4 1812 aaKnown RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 TRIM21P19474 475 aaKnown RBP13.49□□□□□ -0.25
HMGB1-206ENST00000405805 USP5P45974 858 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 UBXN1Q04323 297 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 STX8Q9UNK0 236 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 CEP83Q9Y592 693 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 NRXN3Q9Y4C0 1643 aa13.49□□□□□ -0.25
HMGB1-206ENST00000405805 EBAG9O00559 213 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms