RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ARNTP27540 789 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 MAPK1P28482 360 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 ERCC5P28715 1186 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-204ENST00000399489 TSNAXIP1Q2TAA8 658 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 CBLL1Q75N03 491 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 MICAL1Q8TDZ2 1067 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 ACSBG1Q96GR2 724 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 CBX8Q9HC52 389 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 PICK1Q9NRD5 415 aa5.81□□□□□ -1.48
HMGB1-204ENST00000399489 NME2P22392 152 aa5.8□□□□□ -1.48
HMGB1-204ENST00000399489 CDK5R2Q13319 367 aa5.8□□□□□ -1.48
HMGB1-204ENST00000399489 TTLL4Q14679 1199 aa5.8□□□□□ -1.48
HMGB1-204ENST00000399489 TMC7Q7Z402 723 aa5.8□□□□□ -1.48
HMGB1-204ENST00000399489 NOP9Q86U38 636 aaKnown RBP5.8□□□□□ -1.48
HMGB1-204ENST00000399489 BCL7CQ8WUZ0 217 aaPredicted RBP5.8□□□□□ -1.48
HMGB1-204ENST00000399489 PNMA6FA0A0J9YX94 578 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 DBX1A6NMT0 343 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 IGHA2P01877 340 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 LILRA6Q6PI73 481 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.79□□□□□ -1.48
HMGB1-204ENST00000399489 ZSCAN29Q8IWY8 852 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-204ENST00000399489 WDR89Q96FK6 387 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-204ENST00000399489 CEP44Q9C0F1 390 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 DISC1Q9NRI5 854 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 RAB11FIP3O75154 756 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 HCLS1P14317 486 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-204ENST00000399489 ITGB5P18084 799 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 GSTT1P30711 240 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 MKNK2Q9HBH9 465 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 VAV3Q9UKW4 847 aa5.79□□□□□ -1.48
HMGB1-204ENST00000399489 TMA7Q9Y2S6 64 aaKnown RBP5.79□□□□□ -1.48
HMGB1-204ENST00000399489 TMEM265A0A087WTH1 108 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 ERVK-24P63145 666 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 ATP2B2Q01814 1243 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 PRKCQQ04759 706 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 IFI16Q16666 785 aaKnown RBP5.78□□□□□ -1.48
HMGB1-204ENST00000399489 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.78□□□□□ -1.48
HMGB1-204ENST00000399489 MAP1SQ66K74 1059 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-204ENST00000399489 RNF214Q8ND24 703 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 FBF1Q8TES7 1133 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 DNAJC2Q99543 621 aaKnown RBP5.78□□□□□ -1.48
HMGB1-204ENST00000399489 SRCIN1Q9C0H9 1055 aa5.78□□□□□ -1.48
HMGB1-204ENST00000399489 PLEKHD1A6NEE1 506 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 GIPC1O14908 333 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 HDLBPQ00341 1268 aaKnown RBP5.77□□□□□ -1.49
HMGB1-204ENST00000399489 LRRC14Q15048 493 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 ENOX2Q16206 610 aaKnown RBP5.77□□□□□ -1.49
HMGB1-204ENST00000399489 NXPE4Q6UWF7 544 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 NFXL1Q6ZNB6 911 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 HRASLS5Q96KN8 279 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 LNPKQ9C0E8 428 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 GTF2IRD1Q9UHL9 959 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 RIPOR2Q9Y4F9 1068 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 ZNF792Q3KQV3 632 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PI16Q6UXB8 463 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 CDC37L1Q7L3B6 337 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PDZD3Q86UT5 571 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PLD6Q8N2A8 252 aaKnown RBP5.77□□□□□ -1.49
HMGB1-204ENST00000399489 TOP6BLQ8N6T0 577 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 FAM181AQ8N9Y4 354 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PI4K2BQ8TCG2 481 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 BACH2Q9BYV9 841 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PPM1HQ9ULR3 514 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 PCDHGC5Q9Y5F6 944 aa5.77□□□□□ -1.49
HMGB1-204ENST00000399489 LOC102724159A0A0B4J2E5 919 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 SCAMP3O14828 347 aaKnown RBP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 TREHO43280 583 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 CEACAM5P06731 702 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 RAD51AP2Q09MP3 1159 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 BNIP3Q12983 259 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 PWP2Q15269 919 aaKnown RBP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 KRTAP19-4Q3LI73 84 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 ZC3H12AQ5D1E8 599 aaKnown RBP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 TAF7LQ5H9L4 462 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 ZNF574Q6ZN55 896 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 TICAM2Q86XR7 235 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 KCT2Q8NC54 265 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 GPBAR1Q8TDU6 330 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 ISL2Q96A47 359 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 GPATCH3Q96I76 525 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 DUSP23Q9BVJ7 150 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 TANGO6Q9C0B7 1094 aa5.76□□□□□ -1.49
HMGB1-204ENST00000399489 RC3H2Q9HBD1 1191 aaKnown RBP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 BCCIPQ9P287 314 aaKnown RBP eCLIP5.76□□□□□ -1.49
HMGB1-204ENST00000399489 FUT4P22083 530 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 MAPK8P45983 427 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 MRPL58Q14197 206 aaKnown RBP5.75□□□□□ -1.49
HMGB1-204ENST00000399489 DSC3Q14574 896 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 AOC3Q16853 763 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 ANGEL2Q5VTE6 544 aaKnown RBP5.75□□□□□ -1.49
HMGB1-204ENST00000399489 ALG1LQ6GMV1 187 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 TMED8Q6PL24 325 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-204ENST00000399489 TPTE2Q6XPS3 522 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 NECAB3Q96P71 396 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-204ENST00000399489 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.75□□□□□ -1.49
HMGB1-204ENST00000399489 SBNO2Q9Y2G9 1366 aa5.75□□□□□ -1.49
HMGB1-204ENST00000399489 TRIM37O94972 964 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 C9orf131Q5VYM1 1079 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 SCARA3Q6AZY7 606 aa5.74□□□□□ -1.49
HMGB1-204ENST00000399489 SPRED2Q7Z698 418 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms