RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 POSTNQ15063 836 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 DIS3L2Q8IYB7 885 aaKnown RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 BAG1Q99933 345 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 SERTAD1Q9UHV2 236 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 NFE2L3Q9Y4A8 694 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 COL5A2P05997 1499 aaPredicted RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 PTPREP23469 700 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 SARSP49591 514 aaKnown RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 ADKP55263 362 aaKnown RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 NT5DC1Q5TFE4 455 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 GRAMD1CQ8IYS0 662 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 CMTR1Q8N1G2 835 aaKnown RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 CCDC82Q8N4S0 544 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 TC2NQ8N9U0 490 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 PIGBQ92521 554 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 WDR24Q96S15 920 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 CARD10Q9BWT7 1032 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 NAPBQ9H115 298 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 PLA2G4AP47712 749 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 TOGARAM2Q6ZUX3 1019 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 TRMT44Q8IYL2 757 aaKnown RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 MAGEB6Q8N7X4 407 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 PDILTQ8N807 584 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 MNS1Q8NEH6 495 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 ZKSCAN3Q9BRR0 538 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 SRRTQ9BXP5 876 aaKnown RBP14.57□□□□□ -0.08
SHMT1-205ENST00000395684 EPC1Q9H2F5 836 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 PCDHB6Q9Y5E3 794 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 ECM29Q5VYK3 1845 aa14.57□□□□□ -0.08
SHMT1-205ENST00000395684 SNAP23O00161 211 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 MBD4O95243 580 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 NR5A1Q13285 461 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 TEX13AQ9BXU3 409 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-205ENST00000395684 ARMT1Q9H993 441 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 SEC31BQ9NQW1 1179 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 STRN4Q9NRL3 753 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 GSG1L2A8MUP6 293 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 EFCAB8A8MWE9 144 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 PRKAB2O43741 272 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 STARD3NLO95772 234 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 UQCRFS1P1P0C7P4 283 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 CDK11BP21127 795 aaKnown RBP14.56□□□□□ -0.08
SHMT1-205ENST00000395684 MORC3Q14149 939 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 AKNAD1Q5T1N1 836 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 SPECC1LQ69YQ0 1117 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 USP49Q70CQ1 688 aa14.56□□□□□ -0.08
SHMT1-205ENST00000395684 ENOX1Q8TC92 643 aaKnown RBP14.56□□□□□ -0.08
SHMT1-205ENST00000395684 TRMT112Q9UI30 125 aaKnown RBP14.56□□□□□ -0.08
SHMT1-205ENST00000395684 STX10O60499 249 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 FGFR2P21802 821 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 MLKLQ8NB16 471 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 SPATA5Q8NB90 893 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 WASF1Q92558 559 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 SAMSN1Q9NSI8 373 aaKnown RBP14.55□□□□□ -0.08
SHMT1-205ENST00000395684 HOOK1Q9UJC3 728 aaKnown RBP14.55□□□□□ -0.08
SHMT1-205ENST00000395684 LRP6O75581 1613 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 GNG11P61952 73 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 MAP3K9P80192 1104 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 SAFBQ15424 915 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHMT1-205ENST00000395684 RRP12Q5JTH9 1297 aaKnown RBP14.55□□□□□ -0.08
SHMT1-205ENST00000395684 LPIN2Q92539 896 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 MPHOSPH8Q99549 860 aa14.55□□□□□ -0.08
SHMT1-205ENST00000395684 FOXP1Q9H334 677 aaPredicted RBP14.55□□□□□ -0.08
SHMT1-205ENST00000395684 RASGRF1Q13972 1273 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 PUM3Q15397 648 aaKnown RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 RILPL1Q5EBL4 403 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 TMCO3Q6UWJ1 677 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 MFSD6Q6ZSS7 791 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 OXER1Q8TDS5 423 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 SMARCE1Q969G3 411 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 SHANK3Q9BYB0 1731 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 ACTN4O43707 911 aaKnown RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 SEC31AO94979 1220 aaKnown RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 ATP2B1P20020 1258 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 RTN1Q16799 776 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 BRINP3Q76B58 766 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 CRACR2BQ8N4Y2 399 aaPredicted RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 NOL10Q9BSC4 688 aaKnown RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 CNNM2Q9H8M5 875 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 ARGLU1Q9NWB6 273 aaPredicted RBP14.54□□□□□ -0.08
SHMT1-205ENST00000395684 STRCP1A6NGW2 1772 aa14.54□□□□□ -0.08
SHMT1-205ENST00000395684 PDE8AO60658 829 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 CASQ1P31415 396 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 NR1I3Q14994 352 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 TRIM22Q8IYM9 498 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 SLC4A9Q96Q91 983 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 DESI2Q9BSY9 194 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 KRT23Q9C075 422 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 SRPRBQ9Y5M8 271 aaKnown RBP14.53□□□□□ -0.08
SHMT1-205ENST00000395684 NID2Q14112 1375 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 TOGARAM1Q9Y4F4 1720 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 MAP3K12Q12852 859 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 WTAPQ15007 396 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 LCORLQ8N3X6 602 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 ZNF579Q8NAF0 562 aaKnown RBP14.53□□□□□ -0.08
SHMT1-205ENST00000395684 SPATA20Q8TB22 786 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 KIFC2Q96AC6 838 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 CSRNP2Q9H175 543 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 TOMM22Q9NS69 142 aa14.53□□□□□ -0.08
SHMT1-205ENST00000395684 MTF1Q14872 753 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms