RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FAM217BQ9NTX9 383 aaPredicted RBP24.15■■□□□ 1.46
UPF3A-202ENST00000375299 SERTAD1Q9UHV2 236 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 PCDH11XQ9BZA7 1347 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 PCDH11YQ9BZA8 1340 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 ZCRB1Q8TBF4 217 aaKnown RBP24.15■■□□□ 1.46
UPF3A-202ENST00000375299 IGDCC4Q8TDY8 1250 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 FBXO2Q9UK22 296 aaPredicted RBP24.15■■□□□ 1.46
UPF3A-202ENST00000375299 MTF1Q14872 753 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 ZNF827Q17R98 1081 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 SRGAP1Q7Z6B7 1085 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 SGMS1Q86VZ5 419 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 EXOC4Q96A65 974 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 AK7Q96M32 723 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 PANX2Q96RD6 677 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 SLC26A6Q9BXS9 759 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 LY9Q9HBG7 655 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 SAMSN1Q9NSI8 373 aaKnown RBP24.14■■□□□ 1.46
UPF3A-202ENST00000375299 PSD3Q9NYI0 1048 aa24.14■■□□□ 1.46
UPF3A-202ENST00000375299 AKR1B15C9JRZ8 316 aaPredicted RBP24.14■■□□□ 1.45
UPF3A-202ENST00000375299 MAP2K7O14733 419 aa24.14■■□□□ 1.45
UPF3A-202ENST00000375299 POLR2DO15514 142 aaKnown RBP24.14■■□□□ 1.45
UPF3A-202ENST00000375299 PTPREP23469 700 aa24.14■■□□□ 1.45
UPF3A-202ENST00000375299 SSRP1Q08945 709 aaKnown RBP24.14■■□□□ 1.45
UPF3A-202ENST00000375299 A0A1B0GTH6 734 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 ERVV-2B6SEH9 535 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 UBE2Q2LH0YL09 131 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 MCAMP43121 646 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 CHMP4BP1P59074 171 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 GRIN1Q05586 938 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 MED15Q96RN5 788 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 MYL10Q9BUA6 226 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 TEX13AQ9BXU3 409 aaPredicted RBP24.13■■□□□ 1.45
UPF3A-202ENST00000375299 KCPQ6ZWJ8 1503 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 SOWAHDA6NJG2 315 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 TOB1P50616 345 aaPredicted RBP24.13■■□□□ 1.45
UPF3A-202ENST00000375299 ZSCAN26Q16670 478 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 TAF7LQ5H9L4 462 aa24.13■■□□□ 1.45
UPF3A-202ENST00000375299 IRX2Q9BZI1 471 aaPredicted RBP24.13■■□□□ 1.45
UPF3A-202ENST00000375299 FEZ2Q9UHY8 353 aaPredicted RBP24.13■■□□□ 1.45
UPF3A-202ENST00000375299 H3BQF6 201 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 FMNL1O95466 1100 aaPredicted RBP24.12■■□□□ 1.45
UPF3A-202ENST00000375299 APPP05067 770 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 PLCD1P51178 756 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 TMEM67Q5HYA8 995 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 ISCA1Q9BUE6 129 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 WDR17Q8IZU2 1322 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 MYO5AQ9Y4I1 1855 aaKnown RBP24.12■■□□□ 1.45
UPF3A-202ENST00000375299 RIC1Q4ADV7 1423 aa24.12■■□□□ 1.45
UPF3A-202ENST00000375299 BTBD18B2RXH4 712 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 SLC9C2Q5TAH2 1124 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 WASF1Q92558 559 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 NAA15Q9BXJ9 866 aaKnown RBP24.11■■□□□ 1.45
UPF3A-202ENST00000375299 MMP1P03956 469 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 SAFBQ15424 915 aaKnown RBP eCLIP24.11■■□□□ 1.45
UPF3A-202ENST00000375299 CEP112Q8N8E3 955 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 HNRNPLLQ8WVV9 542 aaKnown RBP24.11■■□□□ 1.45
UPF3A-202ENST00000375299 ADAM21Q9UKJ8 722 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 ADGRG1Q9Y653 693 aa24.11■■□□□ 1.45
UPF3A-202ENST00000375299 ERCC5P28715 1186 aaPredicted RBP24.1■■□□□ 1.45
UPF3A-202ENST00000375299 KANK3Q6NY19 840 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 TOM1L2Q6ZVM7 507 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 DIS3L2Q8IYB7 885 aaKnown RBP24.1■■□□□ 1.45
UPF3A-202ENST00000375299 GRAMD1CQ8IYS0 662 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 CCDC85AQ96PX6 553 aaPredicted RBP24.1■■□□□ 1.45
UPF3A-202ENST00000375299 ZSWIM4Q9H7M6 989 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 LZTFL1Q9NQ48 299 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 CHD4Q14839 1912 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 POTEB2H3BUK9 544 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 GYS2P54840 703 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 RILPL1Q5EBL4 403 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 RAD9BQ6WBX8 426 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 ZNF579Q8NAF0 562 aaKnown RBP24.1■■□□□ 1.45
UPF3A-202ENST00000375299 ANKZF1Q9H8Y5 726 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 CDC23Q9UJX2 597 aa24.1■■□□□ 1.45
UPF3A-202ENST00000375299 LRP6O75581 1613 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 LIFRP42702 1097 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 UBE3CQ15386 1083 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 SLC12A7Q9Y666 1083 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 PAPPAQ13219 1627 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 ACTN4O43707 911 aaKnown RBP24.09■■□□□ 1.45
UPF3A-202ENST00000375299 KIF5CO60282 957 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 IFNAR1P17181 557 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 NKX1-1Q15270 411 aaPredicted RBP24.09■■□□□ 1.45
UPF3A-202ENST00000375299 TTF1Q15361 905 aaPredicted RBP24.09■■□□□ 1.45
UPF3A-202ENST00000375299 GOLGA5Q8TBA6 731 aa24.09■■□□□ 1.45
UPF3A-202ENST00000375299 CWC15Q9P013 229 aaKnown RBP24.09■■□□□ 1.45
UPF3A-202ENST00000375299 TEX33O43247 280 aa24.08■■□□□ 1.45
UPF3A-202ENST00000375299 IFIT5Q13325 482 aaKnown RBP24.08■■□□□ 1.45
UPF3A-202ENST00000375299 APTXQ7Z2E3 356 aaKnown RBP24.08■■□□□ 1.45
UPF3A-202ENST00000375299 MSANTD4Q8NCY6 345 aa24.08■■□□□ 1.45
UPF3A-202ENST00000375299 SPATA20Q8TB22 786 aa24.08■■□□□ 1.45
UPF3A-202ENST00000375299 PRDM11Q9NQV5 511 aa24.08■■□□□ 1.45
UPF3A-202ENST00000375299 RAB21Q9UL25 225 aa24.08■■□□□ 1.45
UPF3A-202ENST00000375299 USP5P45974 858 aa24.08■■□□□ 1.44
UPF3A-202ENST00000375299 LMAN1P49257 510 aa24.08■■□□□ 1.44
UPF3A-202ENST00000375299 BEND6Q5SZJ8 279 aaPredicted RBP24.08■■□□□ 1.44
UPF3A-202ENST00000375299 PPFIBP1Q86W92 1011 aa24.08■■□□□ 1.44
UPF3A-202ENST00000375299 FOXP1Q9H334 677 aaPredicted RBP24.08■■□□□ 1.44
UPF3A-202ENST00000375299 PIH1D3Q9NQM4 214 aaKnown RBP24.08■■□□□ 1.44
UPF3A-202ENST00000375299 PUF60Q9UHX1 559 aaKnown RBP24.08■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms