RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 LGR6Q9HBX8 967 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 PRDM6Q9NQX0 595 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 DCTN4Q9UJW0 460 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 USP42Q9H9J4 1324 aaKnown RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 H7C1W4 665 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 OPLAHO14841 1288 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 GNRH1P01148 92 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 NOS2P35228 1153 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 MAPK8P45983 427 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 C4orf17Q53FE4 359 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 MCM10Q7L590 875 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 BABAM1Q9NWV8 329 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 NSFL1CQ9UNZ2 370 aaKnown RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 TCERG1O14776 1098 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 EIF4A1P60842 406 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 DNM1Q05193 864 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 EHHADHQ08426 723 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 RAD51AP2Q09MP3 1159 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 CLN3Q13286 438 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 AAMPQ13685 434 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 PRICKLE2Q7Z3G6 844 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 PHACTR1Q9C0D0 580 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 POGKQ9P215 609 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 FOXD3Q9UJU5 478 aaPredicted RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 BCL9O00512 1426 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 MYCP01106 439 aaPredicted RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 U2AF1L5P0DN76 240 aaPredicted RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 RHOQP17081 205 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 U2AF1Q01081 240 aaKnown RBP eCLIP2.97□□□□□ -1.937e-6■■■□□ 18.7
VPS54-202ENST00000354504 FMR1Q06787 632 aaKnown RBP eCLIP2.97□□□□□ -1.93
VPS54-202ENST00000354504 WDR43Q15061 677 aaKnown RBP eCLIP2.97□□□□□ -1.93
VPS54-202ENST00000354504 GPR152Q8TDT2 470 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 TBC1D32Q96NH3 1257 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 CITED4Q96RK1 184 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 NIF3L1Q9GZT8 377 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 DUOX1Q9NRD9 1551 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 DMGDHQ9UI17 866 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 WDR81Q562E7 1941 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 ERBB4Q15303 1308 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 CDK2AP1O14519 115 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 CYP27B1O15528 508 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 SUZ12Q15022 739 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 SULT6B1Q6IMI4 303 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 CEP85Q6P2H3 762 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 METTL16Q86W50 562 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 ANKLE2Q86XL3 938 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 RGL4Q8IZJ4 473 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 MYO19Q96H55 970 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 FAM129BQ96TA1 746 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 DUSP9Q99956 384 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 STIM2Q9P246 746 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 PCDHGB7Q9Y5F8 929 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 BAZ2AQ9UIF9 1905 aaKnown RBP2.97□□□□□ -1.93
VPS54-202ENST00000354504 BPTFQ12830 3046 aa2.97□□□□□ -1.93
VPS54-202ENST00000354504 GCP02774 474 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 ACPPP15309 386 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 PLA2G4AP47712 749 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 HDLBPQ00341 1268 aaKnown RBP2.96□□□□□ -1.93
VPS54-202ENST00000354504 PROSER3Q2NL68 480 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 ILDR2Q71H61 639 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 LRRC59Q96AG4 307 aaKnown RBP2.96□□□□□ -1.93
VPS54-202ENST00000354504 COG3Q96JB2 828 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 ZCCHC2Q9C0B9 1178 aaKnown RBP2.96□□□□□ -1.93
VPS54-202ENST00000354504 DCTPP1Q9H773 170 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 ZNF232Q9UNY5 417 aa2.96□□□□□ -1.93
VPS54-202ENST00000354504 SOS1Q07889 1333 aaPredicted RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 ZNF335Q9H4Z2 1342 aaPredicted RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 TTLL8A6PVC2 850 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 BACH1O14867 736 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 TRPA1O75762 1119 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 RASSF7Q02833 373 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 POU4F2Q12837 409 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 ESCO1Q5FWF5 840 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 C6orf118Q5T5N4 469 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 C1orf53Q5VUE5 145 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 CCDC155Q8N6L0 562 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 RNF217Q8TC41 542 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 OTUD7AQ8TE49 926 aaPredicted RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 EPS8L3Q8TE67 593 aaKnown RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 EDEM1Q92611 657 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 LATS2Q9NRM7 1088 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 TMEM63CQ9P1W3 806 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 PARP2Q9UGN5 583 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 NAV1Q8NEY1 1877 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 RIC1Q4ADV7 1423 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 CYP2E1P05181 493 aaPredicted RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 ITGA6P23229 1130 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 ZAP70P43403 619 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 RFX5P48382 616 aaPredicted RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 SF3B2Q13435 895 aaKnown RBP2.96□□□□□ -1.94
VPS54-202ENST00000354504 MTX1Q13505 466 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 ZNF394Q53GI3 561 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 BEND3Q5T5X7 828 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 MEI1Q5TIA1 1274 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 CYP2U1Q7Z449 544 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 GJD3Q8N144 294 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 OSBPL7Q9BZF2 842 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 USP44Q9H0E7 712 aa2.96□□□□□ -1.94
VPS54-202ENST00000354504 PNMA6EA0A0J9YXQ4 647 aa2.95□□□□□ -1.94
VPS54-202ENST00000354504 FIGNL2A6NMB9 653 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms