RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 DMXL2Q8TDJ6 3036 aa0.79□□□□□ -2.28
VIM-210ENST00000637053 ABCA13Q86UQ4 5058 aa0.78□□□□□ -2.28
VIM-210ENST00000637053 DMDP11532 3685 aa0.78□□□□□ -2.28
VIM-210ENST00000637053 LPAP08519 4548 aa0.78□□□□□ -2.28
VIM-210ENST00000637053 STAB2Q8WWQ8 2551 aa0.78□□□□□ -2.28
VIM-210ENST00000637053 DYNC1H1Q14204 4646 aaKnown RBP0.77□□□□□ -2.29
VIM-210ENST00000637053 MACF1Q9UPN3 7388 aaKnown RBP0.77□□□□□ -2.29
VIM-210ENST00000637053 LINC01556Q5JQF7 62 aa0.77□□□□□ -2.29
VIM-210ENST00000637053 Q9Y3F1 56 aa0.77□□□□□ -2.29
VIM-210ENST00000637053 CENPEQ02224 2701 aa0.77□□□□□ -2.29
VIM-210ENST00000637053 LRP1Q07954 4544 aaKnown RBP0.76□□□□□ -2.29
VIM-210ENST00000637053 CMYA5Q8N3K9 4069 aa0.76□□□□□ -2.29
VIM-210ENST00000637053 SVEP1Q4LDE5 3571 aa0.76□□□□□ -2.29
VIM-210ENST00000637053 PKHD1P08F94 4074 aa0.75□□□□□ -2.29
VIM-210ENST00000637053 DEFB133Q30KQ1 61 aa0.75□□□□□ -2.29
VIM-210ENST00000637053 KRTAP19-3Q7Z4W3 81 aa0.75□□□□□ -2.29
VIM-210ENST00000637053 HERC2O95714 4834 aa0.74□□□□□ -2.29
VIM-210ENST00000637053 LAMA1P25391 3075 aa0.74□□□□□ -2.29
VIM-210ENST00000637053 HERC1Q15751 4861 aa0.74□□□□□ -2.29
VIM-210ENST00000637053 SYNE2Q8WXH0 6885 aaKnown RBP0.73□□□□□ -2.29
VIM-210ENST00000637053 FAT1Q14517 4588 aa0.73□□□□□ -2.29
VIM-210ENST00000637053 MUC17Q685J3 4493 aa0.72□□□□□ -2.29
VIM-210ENST00000637053 NEBP20929 6669 aa0.71□□□□□ -2.3
VIM-210ENST00000637053 FAT4Q6V0I7 4981 aa0.71□□□□□ -2.3
VIM-210ENST00000637053 SMR3BP02814 79 aaPredicted RBP0.71□□□□□ -2.3
VIM-210ENST00000637053 RPS29P62273 56 aaKnown RBP0.71□□□□□ -2.3
VIM-210ENST00000637053 HRNRQ86YZ3 2850 aaPredicted RBP0.71□□□□□ -2.3
VIM-210ENST00000637053 LRP1BQ9NZR2 4599 aa0.71□□□□□ -2.3
VIM-210ENST00000637053 TRRAPQ9Y4A5 3859 aa0.7□□□□□ -2.3
VIM-210ENST00000637053 SYNE1Q8NF91 8797 aaKnown RBP0.7□□□□□ -2.3
VIM-210ENST00000637053 AHNAK2Q8IVF2 5795 aa0.68□□□□□ -2.3
VIM-210ENST00000637053 SSPOA2VEC9 5147 aa0.68□□□□□ -2.3
VIM-210ENST00000637053 VPS13CQ709C8 3753 aa0.67□□□□□ -2.3
VIM-210ENST00000637053 MT1AP04731 61 aa0.67□□□□□ -2.3
VIM-210ENST00000637053 KRTAP19-5Q3LI72 72 aa0.67□□□□□ -2.3
VIM-210ENST00000637053 RNF213Q63HN8 5207 aa0.66□□□□□ -2.3
VIM-210ENST00000637053 HTN3P15516 51 aa0.65□□□□□ -2.31
VIM-210ENST00000637053 SPRR2DP22532 72 aa0.65□□□□□ -2.31
VIM-210ENST00000637053 DSTQ03001 7570 aaKnown RBP0.65□□□□□ -2.31
VIM-210ENST00000637053 CD52P31358 61 aa0.64□□□□□ -2.31
VIM-210ENST00000637053 SPRR2BP35325 72 aa0.64□□□□□ -2.31
VIM-210ENST00000637053 AHNAKQ09666 5890 aaKnown RBP0.63□□□□□ -2.31
VIM-210ENST00000637053 KRTAP21-1Q3LI58 79 aa0.63□□□□□ -2.31
VIM-210ENST00000637053 KRTAP6-2Q3LI66 62 aa0.63□□□□□ -2.31
VIM-210ENST00000637053 HMCN2Q8NDA2 5059 aa0.62□□□□□ -2.31
VIM-210ENST00000637053 SPRR2AP35326 72 aa0.61□□□□□ -2.31
VIM-210ENST00000637053 KRTAP5-10Q6L8G5 202 aa0.61□□□□□ -2.31
VIM-210ENST00000637053 KMT2DO14686 5537 aa0.6□□□□□ -2.31
VIM-210ENST00000637053 STARD9Q9P2P6 4700 aa0.6□□□□□ -2.31
VIM-210ENST00000637053 LRP2P98164 4655 aa0.59□□□□□ -2.31
VIM-210ENST00000637053 DEFB4AO15263 64 aa0.59□□□□□ -2.31
VIM-210ENST00000637053 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
VIM-210ENST00000637053 SPRR2FQ96RM1 72 aa0.57□□□□□ -2.32
VIM-210ENST00000637053 SPRR2EP22531 72 aa0.55□□□□□ -2.32
VIM-210ENST00000637053 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
VIM-210ENST00000637053 USH2AO75445 5202 aa0.53□□□□□ -2.32
VIM-210ENST00000637053 MDN1Q9NU22 5596 aa0.53□□□□□ -2.33
VIM-210ENST00000637053 MUC5ACP98088 5654 aa0.52□□□□□ -2.33
VIM-210ENST00000637053 MUC12Q9UKN1 5478 aa0.51□□□□□ -2.33
VIM-210ENST00000637053 MT1EP04732 61 aa0.51□□□□□ -2.33
VIM-210ENST00000637053 MT1LQ93083 61 aa0.47□□□□□ -2.33
VIM-210ENST00000637053 MT1HP80294 61 aa0.46□□□□□ -2.34
VIM-210ENST00000637053 KRTAP19-6Q3LI70 58 aa0.46□□□□□ -2.34
VIM-210ENST00000637053 SPRR2GQ9BYE4 73 aa0.45□□□□□ -2.34
VIM-210ENST00000637053 MT4P47944 62 aa0.41□□□□□ -2.34
VIM-210ENST00000637053 PHGR1C9JFL3 82 aa0.4□□□□□ -2.35
VIM-210ENST00000637053 MT1XP80297 61 aa0.39□□□□□ -2.35
VIM-210ENST00000637053 KRTAP19-8Q3LI54 63 aa0.36□□□□□ -2.35
VIM-210ENST00000637053 MT1GP13640 62 aa0.35□□□□□ -2.35
VIM-210ENST00000637053 KRTAP19-7Q3SYF9 63 aa0.34□□□□□ -2.36
VIM-210ENST00000637053 KRTAP6-1Q3LI64 71 aa0.3□□□□□ -2.36
VIM-210ENST00000637053 MT1HL1P0DM35 61 aa0.29□□□□□ -2.36
VIM-210ENST00000637053 KRTAP19-2Q3LHN2 52 aa0.29□□□□□ -2.36
VIM-210ENST00000637053 MT2AP02795 61 aa0.28□□□□□ -2.36
VIM-210ENST00000637053 MT1BP07438 61 aa0.28□□□□□ -2.36
VIM-210ENST00000637053 MT1MQ8N339 61 aa0.28□□□□□ -2.36
VIM-210ENST00000637053 KRTAP20-2Q3LI61 65 aa0.26□□□□□ -2.37
VIM-210ENST00000637053 MT1FP04733 61 aa0.17□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms