RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TNXBP22105 4242 aa1.69□□□□□ -2.14
SCN1A-212ENST00000636194 MT1AP04731 61 aa1.67□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP2-3P0C7H8 128 aa1.66□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP2-4Q9BYR9 128 aa1.66□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP2-1Q9BYU5 128 aa1.66□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP9-9Q9BYP9 154 aa1.66□□□□□ -2.14
SCN1A-212ENST00000636194 HMCN2Q8NDA2 5059 aa1.66□□□□□ -2.14
SCN1A-212ENST00000636194 SACSQ9NZJ4 4579 aa1.64□□□□□ -2.15
SCN1A-212ENST00000636194 KRTAP9-6A0A140TA67 174 aa1.64□□□□□ -2.15
SCN1A-212ENST00000636194 STARD9Q9P2P6 4700 aa1.63□□□□□ -2.15
SCN1A-212ENST00000636194 DNAH5Q8TE73 4624 aa1.63□□□□□ -2.15
SCN1A-212ENST00000636194 SYNE2Q8WXH0 6885 aaKnown RBP1.62□□□□□ -2.15
SCN1A-212ENST00000636194 KRTAP4-7Q9BYR0 210 aa1.62□□□□□ -2.15
SCN1A-212ENST00000636194 LOC100996750A0A140TA64 210 aa1.62□□□□□ -2.15
SCN1A-212ENST00000636194 KRTAP19-7Q3SYF9 63 aa1.61□□□□□ -2.15
SCN1A-212ENST00000636194 FAT3Q8TDW7 4589 aa1.6□□□□□ -2.15
SCN1A-212ENST00000636194 FAT4Q6V0I7 4981 aa1.59□□□□□ -2.15
SCN1A-212ENST00000636194 KRTAP6-2Q3LI66 62 aa1.59□□□□□ -2.15
SCN1A-212ENST00000636194 DYNC1H1Q14204 4646 aaKnown RBP1.59□□□□□ -2.15
SCN1A-212ENST00000636194 PLECQ15149 4684 aaKnown RBP1.59□□□□□ -2.16
SCN1A-212ENST00000636194 HERC1Q15751 4861 aa1.58□□□□□ -2.16
SCN1A-212ENST00000636194 KRTAP9-7A8MTY7 169 aa1.58□□□□□ -2.16
SCN1A-212ENST00000636194 MUC2Q02817 5179 aa1.57□□□□□ -2.16
SCN1A-212ENST00000636194 KRTAP2-2Q9BYT5 123 aa1.55□□□□□ -2.16
SCN1A-212ENST00000636194 KRTAP4-9Q9BYQ8 210 aa1.55□□□□□ -2.16
SCN1A-212ENST00000636194 FAT1Q14517 4588 aa1.54□□□□□ -2.16
SCN1A-212ENST00000636194 MUC17Q685J3 4493 aa1.54□□□□□ -2.16
SCN1A-212ENST00000636194 USH2AO75445 5202 aa1.53□□□□□ -2.16
SCN1A-212ENST00000636194 KRTAP6-3Q3LI67 103 aa1.52□□□□□ -2.17
SCN1A-212ENST00000636194 LRP1BQ9NZR2 4599 aa1.52□□□□□ -2.17
SCN1A-212ENST00000636194 KRTAP9-4Q9BYQ2 154 aa1.52□□□□□ -2.17
SCN1A-212ENST00000636194 KRTAP4-3Q9BYR4 195 aa1.52□□□□□ -2.17
SCN1A-212ENST00000636194 KMT2DO14686 5537 aa1.5□□□□□ -2.17
SCN1A-212ENST00000636194 KRTAP20-2Q3LI61 65 aa1.5□□□□□ -2.17
SCN1A-212ENST00000636194 MYCBP2O75592 4640 aa1.5□□□□□ -2.17
SCN1A-212ENST00000636194 SSPOA2VEC9 5147 aa1.5□□□□□ -2.17
SCN1A-212ENST00000636194 KRTAP6-1Q3LI64 71 aa1.43□□□□□ -2.18
SCN1A-212ENST00000636194 FSIP2Q5CZC0 6907 aa1.4□□□□□ -2.18
SCN1A-212ENST00000636194 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.4□□□□□ -2.19
SCN1A-212ENST00000636194 KRTAP4-11Q9BYQ6 195 aa1.39□□□□□ -2.19
SCN1A-212ENST00000636194 OBSCNQ5VST9 7968 aa1.35□□□□□ -2.19
SCN1A-212ENST00000636194 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
SCN1A-212ENST00000636194 LRP2P98164 4655 aa1.32□□□□□ -2.2
SCN1A-212ENST00000636194 LPAP08519 4548 aa1.32□□□□□ -2.2
SCN1A-212ENST00000636194 KRTAP5-2Q701N4 177 aa1.31□□□□□ -2.2
SCN1A-212ENST00000636194 KRTAP9-6A8MVA2 160 aa1.31□□□□□ -2.2
SCN1A-212ENST00000636194 KRTAP19-2Q3LHN2 52 aa1.29□□□□□ -2.2
SCN1A-212ENST00000636194 KRTAP4-4Q9BYR3 166 aa1.27□□□□□ -2.21
SCN1A-212ENST00000636194 SYNE1Q8NF91 8797 aaKnown RBP1.25□□□□□ -2.21
SCN1A-212ENST00000636194 FCGBPQ9Y6R7 5405 aaPredicted RBP1.24□□□□□ -2.21
SCN1A-212ENST00000636194 KRTAP4-6Q9BYQ5 205 aa1.23□□□□□ -2.21
SCN1A-212ENST00000636194 KRTAP4-12Q9BQ66 201 aa1.22□□□□□ -2.21
SCN1A-212ENST00000636194 KRTAP4-2Q9BYR5 136 aa1.22□□□□□ -2.21
SCN1A-212ENST00000636194 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.23
SCN1A-212ENST00000636194 MUC12Q9UKN1 5478 aa1.15□□□□□ -2.23
SCN1A-212ENST00000636194 KRTAP5-4Q6L8H1 288 aa1.14□□□□□ -2.23
SCN1A-212ENST00000636194 NEBP20929 6669 aa1.13□□□□□ -2.23
SCN1A-212ENST00000636194 KRTAP5-5Q701N2 237 aaPredicted RBP1.11□□□□□ -2.23
SCN1A-212ENST00000636194 MACF1Q9UPN3 7388 aaKnown RBP1.11□□□□□ -2.23
SCN1A-212ENST00000636194 KRTAP5-9P26371 169 aa1.1□□□□□ -2.23
SCN1A-212ENST00000636194 PHGR1C9JFL3 82 aa1.05□□□□□ -2.24
SCN1A-212ENST00000636194 DSTQ03001 7570 aaKnown RBP1.03□□□□□ -2.24
SCN1A-212ENST00000636194 MUC5ACP98088 5654 aa1.03□□□□□ -2.24
SCN1A-212ENST00000636194 AHNAK2Q8IVF2 5795 aa1.03□□□□□ -2.24
SCN1A-212ENST00000636194 HMCN1Q96RW7 5635 aa1.01□□□□□ -2.25
SCN1A-212ENST00000636194 KRTAP5-3Q6L8H2 238 aa0.98□□□□□ -2.25
SCN1A-212ENST00000636194 MUC5BQ9HC84 5762 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-212ENST00000636194 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-212ENST00000636194 AHNAKQ09666 5890 aaKnown RBP0.96□□□□□ -2.26
SCN1A-212ENST00000636194 MUC19Q7Z5P9 8384 aa0.92□□□□□ -2.26
SCN1A-212ENST00000636194 KRTAP5-8O75690 187 aa0.81□□□□□ -2.28
SCN1A-212ENST00000636194 KRTAP21-1Q3LI58 79 aa0.81□□□□□ -2.28
SCN1A-212ENST00000636194 KRTAP5-10Q6L8G5 202 aa0.8□□□□□ -2.28
SCN1A-212ENST00000636194 KRTAP5-11Q6L8G4 156 aa0.76□□□□□ -2.29
SCN1A-212ENST00000636194 KRTAP21-2Q3LI59 83 aa0.73□□□□□ -2.29
SCN1A-212ENST00000636194 KRTAP5-1Q6L8H4 278 aa0.68□□□□□ -2.3
SCN1A-212ENST00000636194 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
SCN1A-212ENST00000636194 KRTAP5-7Q6L8G8 165 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 82.1 ms