RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ROMO1P60602 79 aa7.03□□□□□ -1.28
SQSTM1-216ENST00000626660 LCE3BQ5TA77 95 aa7□□□□□ -1.29
SQSTM1-216ENST00000626660 BRK1Q8WUW1 75 aa6.96□□□□□ -1.3
SQSTM1-216ENST00000626660 KRTAP19-3Q7Z4W3 81 aa6.93□□□□□ -1.3
SQSTM1-216ENST00000626660 GPR98Q8WXG9 6306 aa6.9□□□□□ -1.3
SQSTM1-216ENST00000626660 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.3
SQSTM1-216ENST00000626660 KRTAP12-3P60328 96 aa6.89□□□□□ -1.31
SQSTM1-216ENST00000626660 LCE5AQ5TCM9 118 aa6.87□□□□□ -1.31
SQSTM1-216ENST00000626660 MT1LQ93083 61 aa6.83□□□□□ -1.32
SQSTM1-216ENST00000626660 MT1GP13640 62 aa6.82□□□□□ -1.32
SQSTM1-216ENST00000626660 PP632Q6XCG6 107 aa6.8□□□□□ -1.32
SQSTM1-216ENST00000626660 MT1MQ8N339 61 aa6.7□□□□□ -1.34
SQSTM1-216ENST00000626660 DSTQ03001 7570 aaKnown RBP6.69□□□□□ -1.34
SQSTM1-216ENST00000626660 KRTAP4-9Q9BYQ8 210 aa6.64□□□□□ -1.35
SQSTM1-216ENST00000626660 KRTAP15-1Q3LI76 137 aa6.58□□□□□ -1.36
SQSTM1-216ENST00000626660 PMAIP1Q13794 54 aa6.57□□□□□ -1.36
SQSTM1-216ENST00000626660 KRTAP19-4Q3LI73 84 aa6.55□□□□□ -1.36
SQSTM1-216ENST00000626660 KRTAP4-3Q9BYR4 195 aa6.5□□□□□ -1.37
SQSTM1-216ENST00000626660 KRTAP4-7Q9BYR0 210 aa6.48□□□□□ -1.37
SQSTM1-216ENST00000626660 PRO0628Q9UI54 55 aa6.44□□□□□ -1.38
SQSTM1-216ENST00000626660 LCE1DQ5T752 114 aa6.4□□□□□ -1.38
SQSTM1-216ENST00000626660 LCE3CQ5T5A8 94 aa6.38□□□□□ -1.39
SQSTM1-216ENST00000626660 MT4P47944 62 aa6.31□□□□□ -1.4
SQSTM1-216ENST00000626660 LCE4AQ5TA78 99 aa6.28□□□□□ -1.4
SQSTM1-216ENST00000626660 HMCN1Q96RW7 5635 aa6.28□□□□□ -1.4
SQSTM1-216ENST00000626660 AHNAK2Q8IVF2 5795 aa6.23□□□□□ -1.41
SQSTM1-216ENST00000626660 PRAC1Q96KF2 57 aa6.19□□□□□ -1.42
SQSTM1-216ENST00000626660 KRTAP5-10Q6L8G5 202 aa6.15□□□□□ -1.42
SQSTM1-216ENST00000626660 LOC100996750A0A140TA64 210 aa6.12□□□□□ -1.43
SQSTM1-216ENST00000626660 KRTAP5-4Q6L8H1 288 aa6.12□□□□□ -1.43
SQSTM1-216ENST00000626660 KRTAP5-5Q701N2 237 aaPredicted RBP6.07□□□□□ -1.44
SQSTM1-216ENST00000626660 KTN1-AS1Q86SY8 53 aa6.06□□□□□ -1.44
SQSTM1-216ENST00000626660 KRTAP4-6Q9BYQ5 205 aa6.01□□□□□ -1.45
SQSTM1-216ENST00000626660 KRTAP5-7Q6L8G8 165 aa6□□□□□ -1.45
SQSTM1-216ENST00000626660 KRTAP9-6A8MVA2 160 aa5.96□□□□□ -1.46
SQSTM1-216ENST00000626660 KRTAP5-3Q6L8H2 238 aa5.92□□□□□ -1.46
SQSTM1-216ENST00000626660 SPRR5A0A1B0GTR4 108 aa5.89□□□□□ -1.47
SQSTM1-216ENST00000626660 KRTAP12-4P60329 112 aa5.88□□□□□ -1.47
SQSTM1-216ENST00000626660 MT1AP04731 61 aa5.83□□□□□ -1.48
SQSTM1-216ENST00000626660 SVIPQ8NHG7 77 aa5.8□□□□□ -1.48
SQSTM1-216ENST00000626660 KRTAP20-2Q3LI61 65 aa5.76□□□□□ -1.49
SQSTM1-216ENST00000626660 KRTAP6-1Q3LI64 71 aa5.74□□□□□ -1.49
SQSTM1-216ENST00000626660 SYNE1Q8NF91 8797 aaKnown RBP5.74□□□□□ -1.49
SQSTM1-216ENST00000626660 KRTAP9-4Q9BYQ2 154 aa5.57□□□□□ -1.52
SQSTM1-216ENST00000626660 KRTAP5-2Q701N4 177 aa5.43□□□□□ -1.54
SQSTM1-216ENST00000626660 KRTAP6-2Q3LI66 62 aa5.42□□□□□ -1.54
SQSTM1-216ENST00000626660 KRTAP4-11Q9BYQ6 195 aa5.37□□□□□ -1.55
SQSTM1-216ENST00000626660 MT3P25713 68 aa5.33□□□□□ -1.56
SQSTM1-216ENST00000626660 AHNAKQ09666 5890 aaKnown RBP5.31□□□□□ -1.56
SQSTM1-216ENST00000626660 MUC5ACP98088 5654 aa5.24□□□□□ -1.57
SQSTM1-216ENST00000626660 LUZP6Q538Z0 58 aa5.23□□□□□ -1.57
SQSTM1-216ENST00000626660 KRTAP5-8O75690 187 aa5.18□□□□□ -1.58
SQSTM1-216ENST00000626660 MUC5BQ9HC84 5762 aaPredicted RBP5.17□□□□□ -1.58
SQSTM1-216ENST00000626660 KRTAP9-9Q9BYP9 154 aa5.09□□□□□ -1.59
SQSTM1-216ENST00000626660 OBSCNQ5VST9 7968 aa4.98□□□□□ -1.61
SQSTM1-216ENST00000626660 KRTAP5-1Q6L8H4 278 aa4.78□□□□□ -1.64
SQSTM1-216ENST00000626660 LCE1EQ5T753 118 aa4.77□□□□□ -1.65
SQSTM1-216ENST00000626660 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
SQSTM1-216ENST00000626660 NDUFAF8A1L188 74 aa4.57□□□□□ -1.68
SQSTM1-216ENST00000626660 LCE3EQ5T5B0 92 aa4.49□□□□□ -1.69
SQSTM1-216ENST00000626660 LCE1BQ5T7P3 118 aa4.48□□□□□ -1.69
SQSTM1-216ENST00000626660 KRTAP4-2Q9BYR5 136 aa4.44□□□□□ -1.7
SQSTM1-216ENST00000626660 LCE1CQ5T751 118 aa4.42□□□□□ -1.7
SQSTM1-216ENST00000626660 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.07□□□□□ -1.76
SQSTM1-216ENST00000626660 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
SQSTM1-216ENST00000626660 KRTAP5-11Q6L8G4 156 aa3.97□□□□□ -1.77
SQSTM1-216ENST00000626660 A0A0A0MQY5 61 aa3.89□□□□□ -1.79
SQSTM1-216ENST00000626660 INE1O15225 51 aa3.77□□□□□ -1.81
SQSTM1-216ENST00000626660 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
SQSTM1-216ENST00000626660 KRTAP21-2Q3LI59 83 aa3.76□□□□□ -1.81
SQSTM1-216ENST00000626660 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
SQSTM1-216ENST00000626660 PRM1P04553 51 aa3.6□□□□□ -1.83
SQSTM1-216ENST00000626660 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.87
SQSTM1-216ENST00000626660 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
SQSTM1-216ENST00000626660 H3BS24 57 aa2.81□□□□□ -1.96
SQSTM1-216ENST00000626660 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
SQSTM1-216ENST00000626660 MUC16Q8WXI7 14507 aa2.18□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 77 ms