RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 FSIP2Q5CZC0 6907 aa4.75□□□□□ -1.65
LINC00538-201ENST00000626109 KRTAP19-6Q3LI70 58 aa4.74□□□□□ -1.65
LINC00538-201ENST00000626109 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
LINC00538-201ENST00000626109 LCE1AQ5T7P2 110 aa4.72□□□□□ -1.65
LINC00538-201ENST00000626109 SSPOA2VEC9 5147 aa4.68□□□□□ -1.66
LINC00538-201ENST00000626109 KRTAP10-5P60370 271 aa4.66□□□□□ -1.66
LINC00538-201ENST00000626109 MT1XP80297 61 aa4.62□□□□□ -1.67
LINC00538-201ENST00000626109 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
LINC00538-201ENST00000626109 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
LINC00538-201ENST00000626109 FCGBPQ9Y6R7 5405 aaPredicted RBP4.54□□□□□ -1.68
LINC00538-201ENST00000626109 LCE3AQ5TA76 89 aa4.52□□□□□ -1.69
LINC00538-201ENST00000626109 LCE1EQ5T753 118 aa4.51□□□□□ -1.69
LINC00538-201ENST00000626109 KRTAP8-1Q8IUC2 63 aa4.46□□□□□ -1.7
LINC00538-201ENST00000626109 KRTAP10-7P60409 375 aaPredicted RBP4.42□□□□□ -1.7
LINC00538-201ENST00000626109 KRTAP10-12P60413 245 aa4.39□□□□□ -1.71
LINC00538-201ENST00000626109 KRTAP6-3Q3LI67 103 aa4.36□□□□□ -1.71
LINC00538-201ENST00000626109 KRTAP12-3P60328 96 aa4.35□□□□□ -1.71
LINC00538-201ENST00000626109 MACF1Q9UPN3 7388 aaKnown RBP4.34□□□□□ -1.71
LINC00538-201ENST00000626109 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
LINC00538-201ENST00000626109 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
LINC00538-201ENST00000626109 KRTAP5-9P26371 169 aa4.21□□□□□ -1.74
LINC00538-201ENST00000626109 KMT2DO14686 5537 aa4.21□□□□□ -1.74
LINC00538-201ENST00000626109 SPRR2FQ96RM1 72 aa4.2□□□□□ -1.74
LINC00538-201ENST00000626109 KRTAP12-4P60329 112 aa4.19□□□□□ -1.74
LINC00538-201ENST00000626109 KRTAP19-5Q3LI72 72 aa4.13□□□□□ -1.75
LINC00538-201ENST00000626109 KRTAP19-7Q3SYF9 63 aa4.12□□□□□ -1.75
LINC00538-201ENST00000626109 MT1EP04732 61 aa4.08□□□□□ -1.76
LINC00538-201ENST00000626109 SPRR2EP22531 72 aa4.05□□□□□ -1.76
LINC00538-201ENST00000626109 SPRR2BP35325 72 aa4.05□□□□□ -1.76
LINC00538-201ENST00000626109 SPRR2AP35326 72 aa4.05□□□□□ -1.76
LINC00538-201ENST00000626109 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
LINC00538-201ENST00000626109 KRTAP19-3Q7Z4W3 81 aa3.98□□□□□ -1.77
LINC00538-201ENST00000626109 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
LINC00538-201ENST00000626109 MT1LQ93083 61 aa3.96□□□□□ -1.78
LINC00538-201ENST00000626109 NEBP20929 6669 aa3.95□□□□□ -1.78
LINC00538-201ENST00000626109 MDN1Q9NU22 5596 aa3.94□□□□□ -1.78
LINC00538-201ENST00000626109 MT1GP13640 62 aa3.92□□□□□ -1.78
LINC00538-201ENST00000626109 SPRR2DP22532 72 aa3.91□□□□□ -1.78
LINC00538-201ENST00000626109 MT1MQ8N339 61 aa3.86□□□□□ -1.79
LINC00538-201ENST00000626109 KRTAP9-6A8MVA2 160 aa3.83□□□□□ -1.8
LINC00538-201ENST00000626109 KRTAP20-1Q3LI63 56 aa3.81□□□□□ -1.8
LINC00538-201ENST00000626109 KRTAP2-3P0C7H8 128 aa3.8□□□□□ -1.8
LINC00538-201ENST00000626109 KRTAP2-4Q9BYR9 128 aa3.8□□□□□ -1.8
LINC00538-201ENST00000626109 KRTAP2-1Q9BYU5 128 aa3.8□□□□□ -1.8
LINC00538-201ENST00000626109 KRTAP4-3Q9BYR4 195 aa3.74□□□□□ -1.81
LINC00538-201ENST00000626109 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
LINC00538-201ENST00000626109 KRTAP5-5Q701N2 237 aaPredicted RBP3.49□□□□□ -1.85
LINC00538-201ENST00000626109 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.86
LINC00538-201ENST00000626109 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.42□□□□□ -1.86
LINC00538-201ENST00000626109 MT4P47944 62 aa3.39□□□□□ -1.87
LINC00538-201ENST00000626109 MT1AP04731 61 aa3.38□□□□□ -1.87
LINC00538-201ENST00000626109 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
LINC00538-201ENST00000626109 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
LINC00538-201ENST00000626109 KRTAP20-2Q3LI61 65 aa3.25□□□□□ -1.89
LINC00538-201ENST00000626109 HMCN1Q96RW7 5635 aa3.23□□□□□ -1.89
LINC00538-201ENST00000626109 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.91
LINC00538-201ENST00000626109 KRTAP6-2Q3LI66 62 aa3.11□□□□□ -1.91
LINC00538-201ENST00000626109 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
LINC00538-201ENST00000626109 PRM1P04553 51 aa3.07□□□□□ -1.92
LINC00538-201ENST00000626109 AHNAK2Q8IVF2 5795 aa2.97□□□□□ -1.93
LINC00538-201ENST00000626109 KRTAP5-10Q6L8G5 202 aa2.94□□□□□ -1.94
LINC00538-201ENST00000626109 LCE1CQ5T751 118 aa2.91□□□□□ -1.94
LINC00538-201ENST00000626109 LCE1BQ5T7P3 118 aa2.91□□□□□ -1.94
LINC00538-201ENST00000626109 GPR98Q8WXG9 6306 aa2.91□□□□□ -1.94
LINC00538-201ENST00000626109 KRTAP5-1Q6L8H4 278 aa2.87□□□□□ -1.95
LINC00538-201ENST00000626109 KRTAP5-7Q6L8G8 165 aa2.78□□□□□ -1.96
LINC00538-201ENST00000626109 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
LINC00538-201ENST00000626109 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
LINC00538-201ENST00000626109 OBSCNQ5VST9 7968 aa2.77□□□□□ -1.97
LINC00538-201ENST00000626109 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
LINC00538-201ENST00000626109 MUC5ACP98088 5654 aa2.56□□□□□ -2
LINC00538-201ENST00000626109 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
LINC00538-201ENST00000626109 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
LINC00538-201ENST00000626109 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
LINC00538-201ENST00000626109 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
LINC00538-201ENST00000626109 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
LINC00538-201ENST00000626109 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 104.3 ms