RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 MUC12Q9UKN1 5478 aa5.33□□□□□ -1.56
NPHP4-211ENST00000622020 LOC100996750A0A140TA64 210 aa5.31□□□□□ -1.56
NPHP4-211ENST00000622020 KRTAP4-3Q9BYR4 195 aa5.31□□□□□ -1.56
NPHP4-211ENST00000622020 FCGBPQ9Y6R7 5405 aaPredicted RBP5.29□□□□□ -1.56
NPHP4-211ENST00000622020 CRCT1Q9UGL9 99 aa5.28□□□□□ -1.56
NPHP4-211ENST00000622020 KRTAP9-2Q9BYQ4 174 aa5.27□□□□□ -1.57
NPHP4-211ENST00000622020 MT1GP13640 62 aa5.2□□□□□ -1.58
NPHP4-211ENST00000622020 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
NPHP4-211ENST00000622020 SYNE1Q8NF91 8797 aaKnown RBP5.07□□□□□ -1.6
NPHP4-211ENST00000622020 KRTAP19-4Q3LI73 84 aa5□□□□□ -1.61
NPHP4-211ENST00000622020 MT1MQ8N339 61 aa4.99□□□□□ -1.61
NPHP4-211ENST00000622020 KRTAP12-4P60329 112 aa4.97□□□□□ -1.61
NPHP4-211ENST00000622020 KRTAP19-3Q7Z4W3 81 aa4.94□□□□□ -1.62
NPHP4-211ENST00000622020 KRTAP9-6A0A140TA67 174 aa4.89□□□□□ -1.63
NPHP4-211ENST00000622020 LCE3BQ5TA77 95 aa4.89□□□□□ -1.63
NPHP4-211ENST00000622020 KRTAP4-9Q9BYQ8 210 aa4.89□□□□□ -1.63
NPHP4-211ENST00000622020 OBSCNQ5VST9 7968 aa4.87□□□□□ -1.63
NPHP4-211ENST00000622020 SYNE2Q8WXH0 6885 aaKnown RBP4.85□□□□□ -1.63
NPHP4-211ENST00000622020 SPRR2FQ96RM1 72 aa4.84□□□□□ -1.63
NPHP4-211ENST00000622020 MACF1Q9UPN3 7388 aaKnown RBP4.83□□□□□ -1.64
NPHP4-211ENST00000622020 MDN1Q9NU22 5596 aa4.74□□□□□ -1.65
NPHP4-211ENST00000622020 LCE5AQ5TCM9 118 aa4.72□□□□□ -1.65
NPHP4-211ENST00000622020 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.69□□□□□ -1.66
NPHP4-211ENST00000622020 KRTAP6-1Q3LI64 71 aa4.64□□□□□ -1.67
NPHP4-211ENST00000622020 KRTAP5-9P26371 169 aa4.54□□□□□ -1.68
NPHP4-211ENST00000622020 LCE3DQ9BYE3 92 aa4.52□□□□□ -1.69
NPHP4-211ENST00000622020 KRTAP9-7A8MTY7 169 aa4.52□□□□□ -1.69
NPHP4-211ENST00000622020 KRTAP6-3Q3LI67 103 aa4.51□□□□□ -1.69
NPHP4-211ENST00000622020 LCE3EQ5T5B0 92 aa4.45□□□□□ -1.7
NPHP4-211ENST00000622020 MT1AP04731 61 aa4.44□□□□□ -1.7
NPHP4-211ENST00000622020 PRM1P04553 51 aa4.43□□□□□ -1.7
NPHP4-211ENST00000622020 LCE1AQ5T7P2 110 aa4.39□□□□□ -1.71
NPHP4-211ENST00000622020 KRTAP5-5Q701N2 237 aaPredicted RBP4.39□□□□□ -1.71
NPHP4-211ENST00000622020 SPRR2EP22531 72 aa4.38□□□□□ -1.71
NPHP4-211ENST00000622020 SPRR2BP35325 72 aa4.38□□□□□ -1.71
NPHP4-211ENST00000622020 SPRR2AP35326 72 aa4.38□□□□□ -1.71
NPHP4-211ENST00000622020 NEBP20929 6669 aa4.23□□□□□ -1.73
NPHP4-211ENST00000622020 KRTAP6-2Q3LI66 62 aa4.22□□□□□ -1.73
NPHP4-211ENST00000622020 SPRR2DP22532 72 aa4.21□□□□□ -1.73
NPHP4-211ENST00000622020 KRTAP9-4Q9BYQ2 154 aa4.18□□□□□ -1.74
NPHP4-211ENST00000622020 MT3P25713 68 aa4□□□□□ -1.77
NPHP4-211ENST00000622020 KRTAP20-1Q3LI63 56 aa3.94□□□□□ -1.78
NPHP4-211ENST00000622020 KRTAP2-2Q9BYT5 123 aa3.88□□□□□ -1.79
NPHP4-211ENST00000622020 MT4P47944 62 aa3.76□□□□□ -1.81
NPHP4-211ENST00000622020 KRTAP5-4Q6L8H1 288 aa3.76□□□□□ -1.81
NPHP4-211ENST00000622020 KRTAP4-6Q9BYQ5 205 aa3.76□□□□□ -1.81
NPHP4-211ENST00000622020 LCE4AQ5TA78 99 aa3.7□□□□□ -1.82
NPHP4-211ENST00000622020 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
NPHP4-211ENST00000622020 LCE1EQ5T753 118 aa3.62□□□□□ -1.83
NPHP4-211ENST00000622020 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
NPHP4-211ENST00000622020 HMCN1Q96RW7 5635 aa3.59□□□□□ -1.84
NPHP4-211ENST00000622020 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
NPHP4-211ENST00000622020 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
NPHP4-211ENST00000622020 LCE1BQ5T7P3 118 aa3.44□□□□□ -1.86
NPHP4-211ENST00000622020 KRTAP5-3Q6L8H2 238 aa3.41□□□□□ -1.86
NPHP4-211ENST00000622020 KRTAP4-11Q9BYQ6 195 aa3.4□□□□□ -1.86
NPHP4-211ENST00000622020 KRTAP5-2Q701N4 177 aa3.4□□□□□ -1.87
NPHP4-211ENST00000622020 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
NPHP4-211ENST00000622020 KRTAP5-10Q6L8G5 202 aa3.23□□□□□ -1.89
NPHP4-211ENST00000622020 AHNAK2Q8IVF2 5795 aa3.17□□□□□ -1.9
NPHP4-211ENST00000622020 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
NPHP4-211ENST00000622020 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
NPHP4-211ENST00000622020 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
NPHP4-211ENST00000622020 KRTAP5-8O75690 187 aa2.99□□□□□ -1.93
NPHP4-211ENST00000622020 KRTAP4-12Q9BQ66 201 aa2.97□□□□□ -1.93
NPHP4-211ENST00000622020 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
NPHP4-211ENST00000622020 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
NPHP4-211ENST00000622020 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
NPHP4-211ENST00000622020 KRTAP21-2Q3LI59 83 aa2.92□□□□□ -1.94
NPHP4-211ENST00000622020 KRTAP5-7Q6L8G8 165 aa2.83□□□□□ -1.96
NPHP4-211ENST00000622020 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
NPHP4-211ENST00000622020 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.72□□□□□ -1.97
NPHP4-211ENST00000622020 KRTAP21-1Q3LI58 79 aa2.71□□□□□ -1.98
NPHP4-211ENST00000622020 KRTAP5-11Q6L8G4 156 aa2.5□□□□□ -2.01
NPHP4-211ENST00000622020 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
NPHP4-211ENST00000622020 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
NPHP4-211ENST00000622020 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms