RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 KRTAP2-3P0C7H8 128 aa3.75□□□□□ -1.81
TCF4-248ENST00000616053 KRTAP2-4Q9BYR9 128 aa3.75□□□□□ -1.81
TCF4-248ENST00000616053 RYR2Q92736 4967 aa3.74□□□□□ -1.81
TCF4-248ENST00000616053 KIAA1109Q2LD37 5005 aa3.74□□□□□ -1.81
TCF4-248ENST00000616053 KMT2CQ8NEZ4 4911 aaKnown RBP3.72□□□□□ -1.81
TCF4-248ENST00000616053 LRP2P98164 4655 aa3.7□□□□□ -1.82
TCF4-248ENST00000616053 LOC100996750A0A140TA64 210 aa3.68□□□□□ -1.82
TCF4-248ENST00000616053 KRTAP4-9Q9BYQ8 210 aa3.67□□□□□ -1.82
TCF4-248ENST00000616053 LCE2AQ5TA79 106 aaPredicted RBP3.6□□□□□ -1.83
TCF4-248ENST00000616053 KRTAP4-3Q9BYR4 195 aa3.59□□□□□ -1.83
TCF4-248ENST00000616053 LPAP08519 4548 aa3.59□□□□□ -1.83
TCF4-248ENST00000616053 KRTAP9-9Q9BYP9 154 aa3.59□□□□□ -1.83
TCF4-248ENST00000616053 HERC2O95714 4834 aa3.56□□□□□ -1.84
TCF4-248ENST00000616053 LCE4AQ5TA78 99 aa3.56□□□□□ -1.84
TCF4-248ENST00000616053 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
TCF4-248ENST00000616053 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
TCF4-248ENST00000616053 MT1AP04731 61 aa3.53□□□□□ -1.84
TCF4-248ENST00000616053 KRTAP6-3Q3LI67 103 aa3.47□□□□□ -1.85
TCF4-248ENST00000616053 SYNE2Q8WXH0 6885 aaKnown RBP3.46□□□□□ -1.86
TCF4-248ENST00000616053 KRTAP19-2Q3LHN2 52 aa3.45□□□□□ -1.86
TCF4-248ENST00000616053 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
TCF4-248ENST00000616053 SYNE1Q8NF91 8797 aaKnown RBP3.41□□□□□ -1.86
TCF4-248ENST00000616053 BIRC6Q9NR09 4857 aa3.38□□□□□ -1.87
TCF4-248ENST00000616053 FSIP2Q5CZC0 6907 aa3.38□□□□□ -1.87
TCF4-248ENST00000616053 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.38□□□□□ -1.87
TCF4-248ENST00000616053 EPPK1P58107 5090 aaKnown RBP3.37□□□□□ -1.87
TCF4-248ENST00000616053 MUC17Q685J3 4493 aa3.37□□□□□ -1.87
TCF4-248ENST00000616053 PCLOQ9Y6V0 5065 aa3.34□□□□□ -1.87
TCF4-248ENST00000616053 HERC1Q15751 4861 aa3.33□□□□□ -1.88
TCF4-248ENST00000616053 KRTAP9-4Q9BYQ2 154 aa3.27□□□□□ -1.89
TCF4-248ENST00000616053 ABCA13Q86UQ4 5058 aa3.27□□□□□ -1.89
TCF4-248ENST00000616053 KRTAP19-7Q3SYF9 63 aa3.25□□□□□ -1.89
TCF4-248ENST00000616053 KRTAP20-2Q3LI61 65 aa3.22□□□□□ -1.89
TCF4-248ENST00000616053 KRTAP6-1Q3LI64 71 aa3.2□□□□□ -1.9
TCF4-248ENST00000616053 MUC2Q02817 5179 aa3.17□□□□□ -1.9
TCF4-248ENST00000616053 HMCN2Q8NDA2 5059 aa3.1□□□□□ -1.91
TCF4-248ENST00000616053 OBSCNQ5VST9 7968 aa3.08□□□□□ -1.92
TCF4-248ENST00000616053 FAT4Q6V0I7 4981 aa3.07□□□□□ -1.92
TCF4-248ENST00000616053 RNF213Q63HN8 5207 aa3.07□□□□□ -1.92
TCF4-248ENST00000616053 MACF1Q9UPN3 7388 aaKnown RBP2.98□□□□□ -1.93
TCF4-248ENST00000616053 UBR4Q5T4S7 5183 aa2.95□□□□□ -1.94
TCF4-248ENST00000616053 KRTAP4-11Q9BYQ6 195 aa2.91□□□□□ -1.94
TCF4-248ENST00000616053 KRTAP4-12Q9BQ66 201 aa2.9□□□□□ -1.94
TCF4-248ENST00000616053 KRTAP4-6Q9BYQ5 205 aa2.9□□□□□ -1.94
TCF4-248ENST00000616053 KRTAP4-2Q9BYR5 136 aa2.9□□□□□ -1.94
TCF4-248ENST00000616053 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
TCF4-248ENST00000616053 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.95
TCF4-248ENST00000616053 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
TCF4-248ENST00000616053 DSTQ03001 7570 aaKnown RBP2.77□□□□□ -1.97
TCF4-248ENST00000616053 NEBP20929 6669 aa2.76□□□□□ -1.97
TCF4-248ENST00000616053 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
TCF4-248ENST00000616053 KMT2DO14686 5537 aa2.65□□□□□ -1.99
TCF4-248ENST00000616053 USH2AO75445 5202 aa2.61□□□□□ -1.99
TCF4-248ENST00000616053 FCGBPQ9Y6R7 5405 aaPredicted RBP2.59□□□□□ -1.99
TCF4-248ENST00000616053 SSPOA2VEC9 5147 aa2.47□□□□□ -2.01
TCF4-248ENST00000616053 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
TCF4-248ENST00000616053 KRTAP5-9P26371 169 aa2.43□□□□□ -2.02
TCF4-248ENST00000616053 KRTAP5-5Q701N2 237 aaPredicted RBP2.41□□□□□ -2.02
TCF4-248ENST00000616053 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.02
TCF4-248ENST00000616053 MUC12Q9UKN1 5478 aa2.4□□□□□ -2.03
TCF4-248ENST00000616053 KRTAP5-3Q6L8H2 238 aa2.2□□□□□ -2.06
TCF4-248ENST00000616053 MDN1Q9NU22 5596 aa2.19□□□□□ -2.06
TCF4-248ENST00000616053 MUC5ACP98088 5654 aa2.02□□□□□ -2.09
TCF4-248ENST00000616053 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
TCF4-248ENST00000616053 AHNAK2Q8IVF2 5795 aa1.84□□□□□ -2.11
TCF4-248ENST00000616053 KRTAP5-2Q701N4 177 aa1.8□□□□□ -2.12
TCF4-248ENST00000616053 HMCN1Q96RW7 5635 aa1.71□□□□□ -2.14
TCF4-248ENST00000616053 MUC5BQ9HC84 5762 aaPredicted RBP1.69□□□□□ -2.14
TCF4-248ENST00000616053 KRTAP5-10Q6L8G5 202 aa1.66□□□□□ -2.14
TCF4-248ENST00000616053 KRTAP21-1Q3LI58 79 aa1.63□□□□□ -2.15
TCF4-248ENST00000616053 AHNAKQ09666 5890 aaKnown RBP1.62□□□□□ -2.15
TCF4-248ENST00000616053 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
TCF4-248ENST00000616053 KRTAP5-1Q6L8H4 278 aa1.53□□□□□ -2.16
TCF4-248ENST00000616053 KRTAP5-11Q6L8G4 156 aa1.51□□□□□ -2.17
TCF4-248ENST00000616053 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.47□□□□□ -2.17
TCF4-248ENST00000616053 KRTAP5-7Q6L8G8 165 aa1.38□□□□□ -2.19
TCF4-248ENST00000616053 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 90.6 ms