RNA–Protein interactions for RNA: ENST00000610623.4

TP53-220, Transcript of tumor protein p53, humanhuman

TSL 1 (best) BASIC

Gene TP53, Length 2,331 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TP53-220ENST00000610623 KRTAP4-2Q9BYR5 136 aa4.69□□□□□ -1.66
TP53-220ENST00000610623 KRTAP12-3P60328 96 aa4.65□□□□□ -1.66
TP53-220ENST00000610623 MT1BP07438 61 aa4.64□□□□□ -1.67
TP53-220ENST00000610623 KRTAP10-12P60413 245 aa4.64□□□□□ -1.67
TP53-220ENST00000610623 LCE3CQ5T5A8 94 aa4.63□□□□□ -1.67
TP53-220ENST00000610623 KRTAP10-5P60370 271 aa4.55□□□□□ -1.68
TP53-220ENST00000610623 MT1XP80297 61 aa4.55□□□□□ -1.68
TP53-220ENST00000610623 KRTAP10-7P60409 375 aaPredicted RBP4.4□□□□□ -1.7
TP53-220ENST00000610623 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
TP53-220ENST00000610623 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
TP53-220ENST00000610623 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
TP53-220ENST00000610623 KRTAP19-5Q3LI72 72 aa4.29□□□□□ -1.72
TP53-220ENST00000610623 LCE3EQ5T5B0 92 aa4.27□□□□□ -1.73
TP53-220ENST00000610623 KRTAP9-6A8MVA2 160 aa4.24□□□□□ -1.73
TP53-220ENST00000610623 USH2AO75445 5202 aa4.17□□□□□ -1.74
TP53-220ENST00000610623 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.74
TP53-220ENST00000610623 SSPOA2VEC9 5147 aa4.08□□□□□ -1.76
TP53-220ENST00000610623 KRTAP19-7Q3SYF9 63 aa4.05□□□□□ -1.76
TP53-220ENST00000610623 KRTAP5-3Q6L8H2 238 aa4.01□□□□□ -1.77
TP53-220ENST00000610623 KMT2DO14686 5537 aa3.98□□□□□ -1.77
TP53-220ENST00000610623 MT1EP04732 61 aa3.98□□□□□ -1.77
TP53-220ENST00000610623 MT1LQ93083 61 aa3.94□□□□□ -1.78
TP53-220ENST00000610623 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
TP53-220ENST00000610623 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
TP53-220ENST00000610623 FCGBPQ9Y6R7 5405 aaPredicted RBP3.78□□□□□ -1.8
TP53-220ENST00000610623 KRTAP19-3Q7Z4W3 81 aa3.77□□□□□ -1.81
TP53-220ENST00000610623 MT1GP13640 62 aa3.77□□□□□ -1.81
TP53-220ENST00000610623 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
TP53-220ENST00000610623 MT1MQ8N339 61 aa3.73□□□□□ -1.81
TP53-220ENST00000610623 FSIP2Q5CZC0 6907 aa3.72□□□□□ -1.81
TP53-220ENST00000610623 SPRR2FQ96RM1 72 aa3.7□□□□□ -1.82
TP53-220ENST00000610623 CRCT1Q9UGL9 99 aa3.66□□□□□ -1.82
TP53-220ENST00000610623 KRTAP4-3Q9BYR4 195 aa3.64□□□□□ -1.83
TP53-220ENST00000610623 KRTAP6-3Q3LI67 103 aa3.64□□□□□ -1.83
TP53-220ENST00000610623 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
TP53-220ENST00000610623 MT1AP04731 61 aa3.56□□□□□ -1.84
TP53-220ENST00000610623 MUC12Q9UKN1 5478 aa3.55□□□□□ -1.84
TP53-220ENST00000610623 MACF1Q9UPN3 7388 aaKnown RBP3.55□□□□□ -1.84
TP53-220ENST00000610623 PRM1P04553 51 aa3.45□□□□□ -1.86
TP53-220ENST00000610623 SPRR2EP22531 72 aa3.45□□□□□ -1.86
TP53-220ENST00000610623 SPRR2BP35325 72 aa3.45□□□□□ -1.86
TP53-220ENST00000610623 SPRR2AP35326 72 aa3.45□□□□□ -1.86
TP53-220ENST00000610623 KRTAP5-5Q701N2 237 aaPredicted RBP3.44□□□□□ -1.86
TP53-220ENST00000610623 SYNE1Q8NF91 8797 aaKnown RBP3.43□□□□□ -1.86
TP53-220ENST00000610623 KRTAP5-11Q6L8G4 156 aa3.41□□□□□ -1.86
TP53-220ENST00000610623 SYNE2Q8WXH0 6885 aaKnown RBP3.36□□□□□ -1.87
TP53-220ENST00000610623 KRTAP6-1Q3LI64 71 aa3.33□□□□□ -1.88
TP53-220ENST00000610623 SPRR2DP22532 72 aa3.32□□□□□ -1.88
TP53-220ENST00000610623 DSTQ03001 7570 aaKnown RBP3.32□□□□□ -1.88
TP53-220ENST00000610623 MDN1Q9NU22 5596 aa3.29□□□□□ -1.88
TP53-220ENST00000610623 KRTAP6-2Q3LI66 62 aa3.23□□□□□ -1.89
TP53-220ENST00000610623 KRTAP5-4Q6L8H1 288 aa3.06□□□□□ -1.92
TP53-220ENST00000610623 NEBP20929 6669 aa3.04□□□□□ -1.92
TP53-220ENST00000610623 GPR98Q8WXG9 6306 aa2.96□□□□□ -1.94
TP53-220ENST00000610623 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
TP53-220ENST00000610623 MT4P47944 62 aa2.86□□□□□ -1.95
TP53-220ENST00000610623 KRTAP5-1Q6L8H4 278 aa2.85□□□□□ -1.95
TP53-220ENST00000610623 KRTAP20-2Q3LI61 65 aa2.85□□□□□ -1.95
TP53-220ENST00000610623 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
TP53-220ENST00000610623 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
TP53-220ENST00000610623 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.8□□□□□ -1.96
TP53-220ENST00000610623 HMCN1Q96RW7 5635 aa2.66□□□□□ -1.98
TP53-220ENST00000610623 LCE1CQ5T751 118 aa2.54□□□□□ -2
TP53-220ENST00000610623 LCE1BQ5T7P3 118 aa2.54□□□□□ -2
TP53-220ENST00000610623 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
TP53-220ENST00000610623 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
TP53-220ENST00000610623 KRTAP5-10Q6L8G5 202 aa2.48□□□□□ -2.01
TP53-220ENST00000610623 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
TP53-220ENST00000610623 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
TP53-220ENST00000610623 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
TP53-220ENST00000610623 KRTAP5-8O75690 187 aa2.31□□□□□ -2.04
TP53-220ENST00000610623 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
TP53-220ENST00000610623 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
TP53-220ENST00000610623 KRTAP21-2Q3LI59 83 aa2.16□□□□□ -2.06
TP53-220ENST00000610623 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
TP53-220ENST00000610623 PHGR1C9JFL3 82 aa1.78□□□□□ -2.12
TP53-220ENST00000610623 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 128.9 ms