RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 K7ERS5 55 aa6.13□□□□□ -1.43
TRIM28-215ENST00000601150 RPS28P62857 69 aaKnown RBP6.09□□□□□ -1.43
TRIM28-215ENST00000601150 MT1GP13640 62 aa6.05□□□□□ -1.44
TRIM28-215ENST00000601150 A6NED7 52 aa6.04□□□□□ -1.44
TRIM28-215ENST00000601150 PP632Q6XCG6 107 aa6.02□□□□□ -1.45
TRIM28-215ENST00000601150 KRTAP25-1Q3LHN0 102 aa6.01□□□□□ -1.45
TRIM28-215ENST00000601150 MT1LQ93083 61 aa6.01□□□□□ -1.45
TRIM28-215ENST00000601150 MT1MQ8N339 61 aa5.95□□□□□ -1.46
TRIM28-215ENST00000601150 KRTAP12-3P60328 96 aa5.93□□□□□ -1.46
TRIM28-215ENST00000601150 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.46
TRIM28-215ENST00000601150 CDC42SE1Q9NRR8 79 aa5.82□□□□□ -1.48
TRIM28-215ENST00000601150 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
TRIM28-215ENST00000601150 KRTAP4-3Q9BYR4 195 aa5.79□□□□□ -1.48
TRIM28-215ENST00000601150 ROMO1P60602 79 aa5.73□□□□□ -1.49
TRIM28-215ENST00000601150 KRTAP4-7Q9BYR0 210 aa5.72□□□□□ -1.49
TRIM28-215ENST00000601150 KRTAP4-9Q9BYQ8 210 aa5.69□□□□□ -1.5
TRIM28-215ENST00000601150 GPR98Q8WXG9 6306 aa5.66□□□□□ -1.5
TRIM28-215ENST00000601150 LCE4AQ5TA78 99 aa5.64□□□□□ -1.51
TRIM28-215ENST00000601150 KRTAP19-4Q3LI73 84 aa5.63□□□□□ -1.51
TRIM28-215ENST00000601150 KRTAP15-1Q3LI76 137 aa5.61□□□□□ -1.51
TRIM28-215ENST00000601150 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
TRIM28-215ENST00000601150 KRTAP5-4Q6L8H1 288 aa5.57□□□□□ -1.52
TRIM28-215ENST00000601150 MT4P47944 62 aa5.55□□□□□ -1.52
TRIM28-215ENST00000601150 LCE3CQ5T5A8 94 aa5.48□□□□□ -1.53
TRIM28-215ENST00000601150 HMCN1Q96RW7 5635 aa5.44□□□□□ -1.54
TRIM28-215ENST00000601150 KRTAP5-5Q701N2 237 aaPredicted RBP5.43□□□□□ -1.54
TRIM28-215ENST00000601150 LOC100996750A0A140TA64 210 aa5.4□□□□□ -1.54
TRIM28-215ENST00000601150 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
TRIM28-215ENST00000601150 BRK1Q8WUW1 75 aa5.37□□□□□ -1.55
TRIM28-215ENST00000601150 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
TRIM28-215ENST00000601150 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
TRIM28-215ENST00000601150 KRTAP20-2Q3LI61 65 aa5.24□□□□□ -1.57
TRIM28-215ENST00000601150 AHNAK2Q8IVF2 5795 aa5.22□□□□□ -1.57
TRIM28-215ENST00000601150 KRTAP9-6A8MVA2 160 aa5.15□□□□□ -1.59
TRIM28-215ENST00000601150 SYNE1Q8NF91 8797 aaKnown RBP5.12□□□□□ -1.59
TRIM28-215ENST00000601150 MT1AP04731 61 aa5.12□□□□□ -1.59
TRIM28-215ENST00000601150 KRTAP5-10Q6L8G5 202 aa5.11□□□□□ -1.59
TRIM28-215ENST00000601150 KRTAP5-3Q6L8H2 238 aa5.08□□□□□ -1.6
TRIM28-215ENST00000601150 KRTAP6-1Q3LI64 71 aa5.07□□□□□ -1.6
TRIM28-215ENST00000601150 PMAIP1Q13794 54 aa5.05□□□□□ -1.6
TRIM28-215ENST00000601150 KRTAP5-7Q6L8G8 165 aa5□□□□□ -1.61
TRIM28-215ENST00000601150 KRTAP9-4Q9BYQ2 154 aa4.93□□□□□ -1.62
TRIM28-215ENST00000601150 KRTAP5-2Q701N4 177 aa4.91□□□□□ -1.62
TRIM28-215ENST00000601150 PRO0628Q9UI54 55 aa4.86□□□□□ -1.63
TRIM28-215ENST00000601150 H3BS24 57 aa4.84□□□□□ -1.63
TRIM28-215ENST00000601150 KRTAP6-2Q3LI66 62 aa4.82□□□□□ -1.64
TRIM28-215ENST00000601150 PRAC1Q96KF2 57 aa4.82□□□□□ -1.64
TRIM28-215ENST00000601150 A0A0A0MQY5 61 aa4.81□□□□□ -1.64
TRIM28-215ENST00000601150 KRTAP4-11Q9BYQ6 195 aa4.74□□□□□ -1.65
TRIM28-215ENST00000601150 MT3P25713 68 aa4.68□□□□□ -1.66
TRIM28-215ENST00000601150 KRTAP5-8O75690 187 aa4.57□□□□□ -1.68
TRIM28-215ENST00000601150 KTN1-AS1Q86SY8 53 aa4.57□□□□□ -1.68
TRIM28-215ENST00000601150 OBSCNQ5VST9 7968 aa4.48□□□□□ -1.69
TRIM28-215ENST00000601150 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
TRIM28-215ENST00000601150 AHNAKQ09666 5890 aaKnown RBP4.31□□□□□ -1.72
TRIM28-215ENST00000601150 KRTAP9-9Q9BYP9 154 aa4.31□□□□□ -1.72
TRIM28-215ENST00000601150 MUC5ACP98088 5654 aa4.3□□□□□ -1.72
TRIM28-215ENST00000601150 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
TRIM28-215ENST00000601150 MUC5BQ9HC84 5762 aaPredicted RBP4.25□□□□□ -1.73
TRIM28-215ENST00000601150 LUZP6Q538Z0 58 aa4.08□□□□□ -1.76
TRIM28-215ENST00000601150 LCE1BQ5T7P3 118 aa3.99□□□□□ -1.77
TRIM28-215ENST00000601150 LCE3DQ9BYE3 92 aa3.99□□□□□ -1.77
TRIM28-215ENST00000601150 KRTAP4-2Q9BYR5 136 aa3.99□□□□□ -1.77
TRIM28-215ENST00000601150 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
TRIM28-215ENST00000601150 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
TRIM28-215ENST00000601150 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.61□□□□□ -1.83
TRIM28-215ENST00000601150 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
TRIM28-215ENST00000601150 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
TRIM28-215ENST00000601150 KRTAP4-12Q9BQ66 201 aa3.55□□□□□ -1.84
TRIM28-215ENST00000601150 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
TRIM28-215ENST00000601150 KRTAP21-2Q3LI59 83 aa3.33□□□□□ -1.88
TRIM28-215ENST00000601150 INE1O15225 51 aa3.19□□□□□ -1.9
TRIM28-215ENST00000601150 PHGR1C9JFL3 82 aa3.07□□□□□ -1.92
TRIM28-215ENST00000601150 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
TRIM28-215ENST00000601150 PRM1P04553 51 aa2.93□□□□□ -1.94
TRIM28-215ENST00000601150 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
TRIM28-215ENST00000601150 KRTAP21-1Q3LI58 79 aa2.32□□□□□ -2.04
TRIM28-215ENST00000601150 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 7.2 ms