RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 KRTAP10-12P60413 245 aa5.47□□□□□ -1.53
SCAF1-203ENST00000598359 LCE3BQ5TA77 95 aa5.46□□□□□ -1.54
SCAF1-203ENST00000598359 KRTAP25-1Q3LHN0 102 aa5.43□□□□□ -1.54
SCAF1-203ENST00000598359 DSTQ03001 7570 aaKnown RBP5.4□□□□□ -1.55
SCAF1-203ENST00000598359 C10orf95Q9H7T3 257 aa5.36□□□□□ -1.55
SCAF1-203ENST00000598359 CAMK2N1Q7Z7J9 78 aa5.33□□□□□ -1.56
SCAF1-203ENST00000598359 KRTAP4-9Q9BYQ8 210 aa5.26□□□□□ -1.57
SCAF1-203ENST00000598359 KRTAP19-7Q3SYF9 63 aa5.18□□□□□ -1.58
SCAF1-203ENST00000598359 TNP1P09430 55 aa5.14□□□□□ -1.59
SCAF1-203ENST00000598359 PP632Q6XCG6 107 aa5.14□□□□□ -1.59
SCAF1-203ENST00000598359 KRTAP23-1A1A580 65 aa5.13□□□□□ -1.59
SCAF1-203ENST00000598359 MT1EP04732 61 aa5.13□□□□□ -1.59
SCAF1-203ENST00000598359 LCE5AQ5TCM9 118 aa5.1□□□□□ -1.59
SCAF1-203ENST00000598359 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
SCAF1-203ENST00000598359 KRTAP19-5Q3LI72 72 aa5.05□□□□□ -1.6
SCAF1-203ENST00000598359 LCE1DQ5T752 114 aa5.05□□□□□ -1.6
SCAF1-203ENST00000598359 HMCN1Q96RW7 5635 aa5.03□□□□□ -1.6
SCAF1-203ENST00000598359 AHNAK2Q8IVF2 5795 aa5.02□□□□□ -1.61
SCAF1-203ENST00000598359 KRTAP5-10Q6L8G5 202 aa4.99□□□□□ -1.61
SCAF1-203ENST00000598359 MT1GP13640 62 aa4.93□□□□□ -1.62
SCAF1-203ENST00000598359 MT4P47944 62 aa4.93□□□□□ -1.62
SCAF1-203ENST00000598359 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
SCAF1-203ENST00000598359 MT1LQ93083 61 aa4.9□□□□□ -1.63
SCAF1-203ENST00000598359 MT1MQ8N339 61 aa4.89□□□□□ -1.63
SCAF1-203ENST00000598359 KRTAP5-7Q6L8G8 165 aa4.88□□□□□ -1.63
SCAF1-203ENST00000598359 KRTAP15-1Q3LI76 137 aa4.86□□□□□ -1.63
SCAF1-203ENST00000598359 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
SCAF1-203ENST00000598359 KRTAP4-3Q9BYR4 195 aa4.84□□□□□ -1.63
SCAF1-203ENST00000598359 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
SCAF1-203ENST00000598359 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
SCAF1-203ENST00000598359 KRTAP4-6Q9BYQ5 205 aa4.72□□□□□ -1.65
SCAF1-203ENST00000598359 KRTAP4-7Q9BYR0 210 aa4.72□□□□□ -1.65
SCAF1-203ENST00000598359 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
SCAF1-203ENST00000598359 KRTAP5-4Q6L8H1 288 aa4.66□□□□□ -1.66
SCAF1-203ENST00000598359 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
SCAF1-203ENST00000598359 NDUFAF8A1L188 74 aa4.48□□□□□ -1.69
SCAF1-203ENST00000598359 LOC100996750A0A140TA64 210 aa4.47□□□□□ -1.69
SCAF1-203ENST00000598359 KRTAP5-5Q701N2 237 aaPredicted RBP4.47□□□□□ -1.69
SCAF1-203ENST00000598359 LUZP6Q538Z0 58 aa4.46□□□□□ -1.7
SCAF1-203ENST00000598359 KRTAP20-2Q3LI61 65 aa4.44□□□□□ -1.7
SCAF1-203ENST00000598359 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
SCAF1-203ENST00000598359 KRTAP12-4P60329 112 aa4.35□□□□□ -1.71
SCAF1-203ENST00000598359 AHNAKQ09666 5890 aaKnown RBP4.31□□□□□ -1.72
SCAF1-203ENST00000598359 SYNE1Q8NF91 8797 aaKnown RBP4.29□□□□□ -1.72
SCAF1-203ENST00000598359 MUC5ACP98088 5654 aa4.25□□□□□ -1.73
SCAF1-203ENST00000598359 KRTAP4-11Q9BYQ6 195 aa4.21□□□□□ -1.74
SCAF1-203ENST00000598359 MUC5BQ9HC84 5762 aaPredicted RBP4.2□□□□□ -1.74
SCAF1-203ENST00000598359 KRTAP9-6A8MVA2 160 aa4.19□□□□□ -1.74
SCAF1-203ENST00000598359 H3BS24 57 aa4.18□□□□□ -1.74
SCAF1-203ENST00000598359 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
SCAF1-203ENST00000598359 MT1AP04731 61 aa4.15□□□□□ -1.75
SCAF1-203ENST00000598359 KRTAP5-8O75690 187 aa4.12□□□□□ -1.75
SCAF1-203ENST00000598359 KRTAP5-2Q701N4 177 aa4.08□□□□□ -1.76
SCAF1-203ENST00000598359 KRTAP9-4Q9BYQ2 154 aa4.01□□□□□ -1.77
SCAF1-203ENST00000598359 A0A0A0MQY5 61 aa3.99□□□□□ -1.77
SCAF1-203ENST00000598359 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
SCAF1-203ENST00000598359 KRTAP9-9Q9BYP9 154 aa3.99□□□□□ -1.77
SCAF1-203ENST00000598359 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
SCAF1-203ENST00000598359 MT3P25713 68 aa3.78□□□□□ -1.8
SCAF1-203ENST00000598359 INE1O15225 51 aa3.76□□□□□ -1.81
SCAF1-203ENST00000598359 KRTAP5-1Q6L8H4 278 aa3.68□□□□□ -1.82
SCAF1-203ENST00000598359 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
SCAF1-203ENST00000598359 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
SCAF1-203ENST00000598359 LCE3DQ9BYE3 92 aa3.33□□□□□ -1.88
SCAF1-203ENST00000598359 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
SCAF1-203ENST00000598359 LCE3EQ5T5B0 92 aa3.26□□□□□ -1.89
SCAF1-203ENST00000598359 LCE1CQ5T751 118 aa3.22□□□□□ -1.89
SCAF1-203ENST00000598359 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
SCAF1-203ENST00000598359 PHGR1C9JFL3 82 aa2.95□□□□□ -1.94
SCAF1-203ENST00000598359 KRTAP5-11Q6L8G4 156 aa2.95□□□□□ -1.94
SCAF1-203ENST00000598359 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.91□□□□□ -1.94
SCAF1-203ENST00000598359 PRM1P04553 51 aa2.9□□□□□ -1.95
SCAF1-203ENST00000598359 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
SCAF1-203ENST00000598359 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
SCAF1-203ENST00000598359 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
SCAF1-203ENST00000598359 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
SCAF1-203ENST00000598359 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
SCAF1-203ENST00000598359 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 859 ms