RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KRTAP12-4P60329 112 aa3.39□□□□□ -1.87
TRIM28-210ENST00000597618 C10orf95Q9H7T3 257 aa3.39□□□□□ -1.87
TRIM28-210ENST00000597618 SERP2Q8N6R1 65 aa3.38□□□□□ -1.87
TRIM28-210ENST00000597618 KRTAP5-5Q701N2 237 aaPredicted RBP3.37□□□□□ -1.87
TRIM28-210ENST00000597618 SPINT4Q6UDR6 99 aa3.35□□□□□ -1.87
TRIM28-210ENST00000597618 KRTAP4-7Q9BYR0 210 aa3.35□□□□□ -1.87
TRIM28-210ENST00000597618 MUC5ACP98088 5654 aa3.34□□□□□ -1.87
TRIM28-210ENST00000597618 LCE3AQ5TA76 89 aa3.34□□□□□ -1.87
TRIM28-210ENST00000597618 MUC5BQ9HC84 5762 aaPredicted RBP3.31□□□□□ -1.88
TRIM28-210ENST00000597618 SYNE1Q8NF91 8797 aaKnown RBP3.31□□□□□ -1.88
TRIM28-210ENST00000597618 COA5Q86WW8 74 aa3.31□□□□□ -1.88
TRIM28-210ENST00000597618 KRTAP4-11Q9BYQ6 195 aa3.29□□□□□ -1.88
TRIM28-210ENST00000597618 KRTAP12-1P59990 96 aa3.28□□□□□ -1.88
TRIM28-210ENST00000597618 SEC61GP60059 68 aa3.28□□□□□ -1.88
TRIM28-210ENST00000597618 SERP1Q9Y6X1 66 aa3.28□□□□□ -1.88
TRIM28-210ENST00000597618 SPATA8Q6RVD6 105 aa3.27□□□□□ -1.89
TRIM28-210ENST00000597618 COX7CP15954 63 aa3.26□□□□□ -1.89
TRIM28-210ENST00000597618 TNP1P09430 55 aa3.25□□□□□ -1.89
TRIM28-210ENST00000597618 PCP4P48539 62 aa3.25□□□□□ -1.89
TRIM28-210ENST00000597618 A0A1B0GU33 70 aa3.24□□□□□ -1.89
TRIM28-210ENST00000597618 H7BZZ5 65 aa3.23□□□□□ -1.89
TRIM28-210ENST00000597618 KRTAP12-3P60328 96 aa3.22□□□□□ -1.89
TRIM28-210ENST00000597618 KRTAP4-2Q9BYR5 136 aa3.2□□□□□ -1.9
TRIM28-210ENST00000597618 KRTAP5-8O75690 187 aa3.19□□□□□ -1.9
TRIM28-210ENST00000597618 KRTAP5-2Q701N4 177 aa3.16□□□□□ -1.9
TRIM28-210ENST00000597618 SMIM26A0A096LP01 95 aa3.15□□□□□ -1.91
TRIM28-210ENST00000597618 A0A1B0GU69 56 aa3.14□□□□□ -1.91
TRIM28-210ENST00000597618 A8MU10 97 aa3.1□□□□□ -1.91
TRIM28-210ENST00000597618 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.91
TRIM28-210ENST00000597618 A0A0A0MQY5 61 aa3.08□□□□□ -1.92
TRIM28-210ENST00000597618 ANAPC13Q9BS18 74 aa3.08□□□□□ -1.92
TRIM28-210ENST00000597618 KRTAP15-1Q3LI76 137 aa3.04□□□□□ -1.92
TRIM28-210ENST00000597618 PRR15LQ9BU68 103 aa3.04□□□□□ -1.92
TRIM28-210ENST00000597618 CCDC179H3BU77 68 aa3.03□□□□□ -1.92
TRIM28-210ENST00000597618 MT1AP04731 61 aa3.03□□□□□ -1.92
TRIM28-210ENST00000597618 ATP5EP56381 51 aaPredicted RBP3.03□□□□□ -1.92
TRIM28-210ENST00000597618 KRTAP6-1Q3LI64 71 aa3.02□□□□□ -1.93
TRIM28-210ENST00000597618 LINC01558Q9Y6Z2 57 aa3.02□□□□□ -1.93
TRIM28-210ENST00000597618 KRTAP6-2Q3LI66 62 aa2.97□□□□□ -1.93
TRIM28-210ENST00000597618 UQCR11O14957 56 aa2.95□□□□□ -1.94
TRIM28-210ENST00000597618 KRTAP25-1Q3LHN0 102 aa2.93□□□□□ -1.94
TRIM28-210ENST00000597618 LCE3CQ5T5A8 94 aa2.93□□□□□ -1.94
TRIM28-210ENST00000597618 TMEM258P61165 79 aa2.92□□□□□ -1.94
TRIM28-210ENST00000597618 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.95
TRIM28-210ENST00000597618 MIR22HGQ0VDD5 57 aa2.86□□□□□ -1.95
TRIM28-210ENST00000597618 K7ERS5 55 aa2.82□□□□□ -1.96
TRIM28-210ENST00000597618 V9GYY9 64 aa2.8□□□□□ -1.96
TRIM28-210ENST00000597618 MT3P25713 68 aa2.79□□□□□ -1.96
TRIM28-210ENST00000597618 Q1T7F1 81 aa2.78□□□□□ -1.96
TRIM28-210ENST00000597618 PSPHP1O15172 72 aa2.76□□□□□ -1.97
TRIM28-210ENST00000597618 KRTAP9-6A8MVA2 160 aa2.75□□□□□ -1.97
TRIM28-210ENST00000597618 A6NED7 52 aa2.66□□□□□ -1.98
TRIM28-210ENST00000597618 LCE1EQ5T753 118 aa2.66□□□□□ -1.98
TRIM28-210ENST00000597618 CDC42SE1Q9NRR8 79 aa2.66□□□□□ -1.98
TRIM28-210ENST00000597618 ROMO1P60602 79 aa2.62□□□□□ -1.99
TRIM28-210ENST00000597618 RPS28P62857 69 aaKnown RBP2.6□□□□□ -1.99
TRIM28-210ENST00000597618 PRAC1Q96KF2 57 aa2.54□□□□□ -2
TRIM28-210ENST00000597618 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
TRIM28-210ENST00000597618 PRO0628Q9UI54 55 aa2.48□□□□□ -2.01
TRIM28-210ENST00000597618 LCE1CQ5T751 118 aa2.47□□□□□ -2.01
TRIM28-210ENST00000597618 NDUFAF8A1L188 74 aa2.42□□□□□ -2.02
TRIM28-210ENST00000597618 PMAIP1Q13794 54 aa2.39□□□□□ -2.03
TRIM28-210ENST00000597618 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
TRIM28-210ENST00000597618 LCE1FQ5T754 118 aa2.3□□□□□ -2.04
TRIM28-210ENST00000597618 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
TRIM28-210ENST00000597618 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.21□□□□□ -2.06
TRIM28-210ENST00000597618 KTN1-AS1Q86SY8 53 aa2.2□□□□□ -2.06
TRIM28-210ENST00000597618 BRK1Q8WUW1 75 aa2.19□□□□□ -2.06
TRIM28-210ENST00000597618 LUZP6Q538Z0 58 aa2.15□□□□□ -2.07
TRIM28-210ENST00000597618 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
TRIM28-210ENST00000597618 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
TRIM28-210ENST00000597618 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
TRIM28-210ENST00000597618 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
TRIM28-210ENST00000597618 LCE3EQ5T5B0 92 aa1.85□□□□□ -2.11
TRIM28-210ENST00000597618 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
TRIM28-210ENST00000597618 INE1O15225 51 aa1.6□□□□□ -2.15
TRIM28-210ENST00000597618 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
TRIM28-210ENST00000597618 PRM1P04553 51 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 67.6 ms